Helicobacter pylori Puno135: HPPN135_07940
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Entry
HPPN135_07940 CDS
T01920
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
heu
Helicobacter pylori Puno135
Pathway
heu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
heu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPPN135_07940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
heu03400
]
HPPN135_07940
Enzymes [BR:
heu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPPN135_07940
DNA repair and recombination proteins [BR:
heu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPPN135_07940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Motif
Other DBs
NCBI-ProteinID:
AEN19247
UniProt:
G2M941
LinkDB
All DBs
Position
1611553..1614552
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSSLYRALNKGFDYQILACKDFKESELAKEVISYFKPNTKAILFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQEAIIIAPISALLHPLPKKELLESFKITLLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDTECESIKEFDPTTQMSL
KEDLLEIEIPPTLFSLNEQSYKDLKTKVEQSPLNSFSKDLTSFGLWFLGEKANDLLHAYK
SVISPKALEEIQELASLNELDGERFKFLKVLENPQGYEDLEIHAHALESFIALHSNRKIT
LLAPNKTILDNAISALEKSNIECVIAPFVLNFKTPDGIFISLNSFERKKKRQKSKLALNE
LNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGEDKLLLPVENLHLIARYVAQS
DSVPTKDRLGKGSFLKLKAKVKTKLLEIASKIIELAAERNLILGKKMDTHLAELEVFKSH
AGFEYTNDQEKAIAEISKDLSSNRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYASEKNKLLKAVELGLIDVLVGTHAILGAKF
KNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKIPP
TDRKPSRTFLKEKNDELLKEIIHRELRRNGQIFYIHNHIASISKVKTKLEDLIPKLKIAI
LHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLSVSAFLNPELIASDSLRLD
LYRRLSLCENIDEVGQIHEEIEDRFGKTDDLSAQFLQIITLKILANQLGIIKLSNFNQNI
TITYSDEKKESLKAPSKDDNDILETLLKHLHAQISLKRH
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagcctctatagagccttaaacaaaggctttgattatcaaatactcgct
tgtaaggattttaaagagtccgagctcgctaaagaagtcataagctattttaagccaaat
accaaagccattcttttcccggagtttagggctaaaaaaaacgacgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttaagggagttttatcaagccttagaaaac
aagcaagaagcgatcattattgcccctattagcgcgttattgcaccctttgcctaaaaaa
gaacttttagaaagctttaaaatcactcttttagaaaaatataaccttaaggatttaaaa
gacaagcttttttattatggttatgaaattttagacttagtggaagtggaaggcgaagcg
agctttaggggggatattgtggatatttatgcgcccaattctaaagcgtatcgcttgagt
ttttttgacactgagtgtgagagcattaaggaatttgaccccaccactcaaatgagcctc
aaagaagatttgttagaaattgaaatcccccccacgctttttagtttaaacgaacaatct
tataaggatctgaaaaccaaagtagagcaaagcccattaaatagcttttctaaagattta
accagttttggtttgtggtttttaggagaaaaagcaaacgatttgttgcatgcctataaa
agcgttataagccccaaagctttagaagaaattcaagaattagcgagcttaaacgaattg
gatggtgagcgtttcaaatttttaaaggttttagaaaacccgcaaggctatgaagattta
gaaatccatgcacatgccctagaaagctttatagctttgcattcaaatcgtaagatcacg
ctcctagcccctaataaaacgattttagacaatgcgataagcgcgcttgaaaaaagcaac
attgaatgcgtcatcgccccctttgtgttaaattttaaaacccctgatgggatttttatt
tcgctcaattcctttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaatgaa
ttgaatgcgggcgaatgggtggtgcatgatgattacggggtgggcgtgttttctcaatta
gtccaacacagcgttttagggagcaagagggattttttagaaatcgcttatttgggcgaa
gacaaactgctattaccggtagaaaatttgcatctaatcgctcgctatgtggcgcaaagc
gatagcgtgccaactaaagaccggctagggaaagggagtttcctcaaactgaaagctaaa
gttaaaactaagcttttagagattgcaagcaagatcattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggacacgcatttagcggagttggaagtctttaaatcgcat
gcggggtttgaatacacaaacgatcaagaaaaagccatcgctgaaatttcaaaggattta
agttctaatagagtgatggacagattattgagtggggatgtgggttttgggaaaacagaa
gtagcgatgcatgcgattttttgcgcgtttttgaacggctttcaaagcgctctagtcgtg
cctactactttattagcgcaccagcattttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatgcgagcgaaaaaaacaagcttttaaaggcg
gtggaattagggctaattgatgttcttgtaggcacgcatgcgattttgggtgcgaaattt
aaaaacttgggtttagtggtggtggatgaagagcataaatttggcgtgaaacaaaaagaa
gctttaaaagaattgagtaaaagcgtgcattttttaagcatgtccgctacgcctatccca
cgcactttaaacatggcgctctctcaaattaaaggcattagctctttaaaaatcccgccc
acagacagaaagcccagccgcacttttttgaaagaaaagaatgacgaactcttaaaagag
attattcatagagaattacgccgtaacgggcaaattttttacatccataaccacatcgct
agcatttcaaaagtcaaaaccaagctagaagatttaatccctaaactcaaaatcgctatt
ttgcattcccaaattaacgcaaatgagagcgaagaaatcatgctagagtttgctaaggga
aactatcaggttttattatgcacttctattgtggaatcagggattcatttgcctaacgct
aacacgatcattatagataacgcgcagaattttgggctggctgatttgcaccaattaaga
gggcgtgtggggagaggcaaaaaagaaggcttttgctatttccttatagaagatcaaaaa
agtttgaatgaacaagccctaaaacgcttgctcgctttagaaaaaaattcgtatttaggc
agcggggagagtattgcttatcatgatttagaaatcagggggggcgggaatttgcttggg
caagatcagagcgggcatattaaaaatatcggctatgcgctctatacgcgcatgcttgag
gatgcgatttatgaattgagtggggggaaaaaaaggcttgaaaagagcgtagagatccaa
ttgagcgtgagcgcttttttaaaccctgaactcattgcaagcgatagtttgaggttagat
ttgtaccgccgtttgagtttgtgtgagaatatagatgaggtggggcaaatccatgaagaa
atagaagacaggtttggcaaaacagacgacttgagtgctcaatttttgcaaatcattacg
cttaaaattctagccaaccagcttggcattattaaactttctaatttcaatcaaaacatc
accatcacttatagcgatgaaaagaaagaaagcctaaaagccccaagcaaagacgataac
gatatcttagaaacccttttgaaacatttgcacgctcaaatttctttaaaacggcactaa
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