Herbaspirillum sp. DW155: HBDW_03520
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Entry
HBDW_03520 CDS
T10195
Symbol
ffh
Name
(GenBank) signal recognition particle protein
KO
K03106
signal recognition particle subunit SRP54 [EC:
3.6.5.4
]
Organism
hew Herbaspirillum sp. DW155
Pathway
hew02024
Quorum sensing
hew03060
Protein export
hew03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
hew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
HBDW_03520 (ffh)
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
HBDW_03520 (ffh)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HBDW_03520 (ffh)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
hew02044
]
HBDW_03520 (ffh)
Enzymes [BR:
hew01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.5 Acting on GTP to facilitate cellular and subcellular movement
3.6.5.4 signal-recognition-particle GTPase
HBDW_03520 (ffh)
Secretion system [BR:
hew02044
]
Sec (secretion) system
Prokaryotic Sec-SRP core components
HBDW_03520 (ffh)
Eukaryotic Sec-SRP protein
HBDW_03520 (ffh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRP54
SRP_SPB
SRP54_N
Zeta_toxin
CbiA
AAA_22
AAA_30
T2SSE
AAA_26
YqeC
AAA_31
AAA_33
AAA_16
GTP_EFTU
nSTAND3
Hpt
APS_kinase
AAA_19
AAA_14
ResIII
Thymidylate_kin
AAA_18
6PF2K
KTI12
ATP_bind_1
TsaE
Rad17
HTH_Crp_2
DUF5696
AAA
Motif
Other DBs
NCBI-ProteinID:
BEV13564
LinkDB
All DBs
Position
complement(395733..397103)
Genome browser
AA seq
456 aa
AA seq
DB search
MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKEKAM
GEEVIGSLTPGQALVGVVQRELASLMGADLGAEASQLNFATQPPAIILMAGLQGAGKTTT
VGKLAKYLRENKKKKVLTVSADVYRPAAIGQLQTVTGQAGADFFPSQPTDKPVDIALAAL
DYAKKHHHEVLIVDTAGRLGIDQAMMDEIRAVHAAIKPIETLFVVDAMLGQDAINTAKAF
NDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRILG
MGDILALVEEARKGVDMEAAQDLAHKIKGGGKFDLNDFKAQLSQMKKMGGLTSLLDKLPA
QMQAAAGNANMDQAEKQVRRMEGIINSMTPQERAKPELIKATRKRRIAAGAGVQVQEVNR
MLSQFEQMQSMMKKLKGGGMMKMMRSMKGMLPGGMR
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgctagacaacctgacccaacgcctcgccaaagtcgtcaaaaccatgcgcggcgaggcg
cgactgaccgaatccaataccgccgagatgctgcgcgaagtgcgcctggccctgctggag
gccgacgtggccctgcccgccgtacgcgagttcatcgccaaggtgaaggaaaaagccatg
ggcgaagaggtcatcggctcgctcacccccggccaggcgctggtgggcgtggtccagcgc
gagctggccagcctgatgggcgccgacctcggtgccgaagcctcgcaactgaactttgcg
acccagccacccgccatcatcctgatggccggcctgcagggtgccggtaaaaccaccacc
gtcggcaaactcgccaagtacctgcgcgagaacaagaaaaagaaagtcctgaccgtctcc
gccgacgtctaccgcccggccgccatcggccagctgcagaccgtgaccggccaggccggt
gccgacttcttccccagccagccgaccgacaagccggtcgacatcgccctggccgcgctg
gattacgccaagaagcaccaccatgaagtgctcatcgtcgacactgccggccgtctcggc
atcgaccaggccatgatggatgaaatccgtgccgtgcacgccgccatcaagcccatcgaa
accctgttcgtggtcgatgccatgctgggccaggacgccatcaacaccgccaaggccttc
aacgatgccctgccgctgaccggcgtggtgctcaccaagctggacggcgactcgcgcggc
ggtgcggcgctgtcggtgcgccacatcaccggcaagcccatcaagttcgccggcgtggcc
gaaaagctcgatggactggaagccttcgatccctcgcgcatggctaaccgcatcctcggc
atgggcgacatcctggccctggtggaagaggcgcgcaagggtgtggacatggaagccgcg
caggatctggcgcacaagatcaagggtggcggcaagttcgacctcaatgacttcaaggcg
cagctgtcgcagatgaagaaaatgggcggcctcaccagcctcttggacaagctgccggcc
cagatgcaggccgctgccggcaacgccaacatggaccaggccgaaaagcaggtgcgccgc
atggaaggcatcatcaactccatgaccccgcaggagcgcgccaagcccgaactgatcaag
gccacccgcaagcgccgcatcgctgccggtgccggggtgcaggtgcaggaagtgaaccgc
atgctgtcccagttcgagcagatgcaatcgatgatgaagaagctcaagggcggcggcatg
atgaagatgatgcgcagcatgaagggcatgctgccgggcggcatgcgctga
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