Herbaspirillum sp. DW155: HBDW_11540
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Entry
HBDW_11540 CDS
T10195
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
hew Herbaspirillum sp. DW155
Pathway
hew02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
hew00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HBDW_11540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hew03021
]
HBDW_11540
Transcription machinery [BR:
hew03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HBDW_11540
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
ENOD40
HTH_24
Sigma70_ECF
DUF4771
DUF8073_M
Motif
Other DBs
NCBI-ProteinID:
BEV14366
LinkDB
All DBs
Position
complement(1281942..1282445)
Genome browser
AA seq
167 aa
AA seq
DB search
MPSGTQDASLAQFYDAHHSWLQGWLRQRLGCQHDAADLSQDTFIQVVAARNVQDIQEPRA
FLVTLAKRVMFNFWRRRDIEQAYLEELAGLPTGCVPSEEDRALVLEALQQIDAILGALKP
NVREVFLLSQLHELTYRDIGERLNMPVITVRRYMTQAMRACWLASIH
NT seq
504 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccggcactcaagatgcttctctggcgcagttttacgatgcccaccatagctgg
cttcagggctggctacggcaacggctcgggtgtcagcatgatgcggccgatctgagccag
gacacgttcatccaggtcgtggcggcacgcaatgtgcaagatatccaggaaccgcgtgcc
tttctggtcaccctggccaagcgcgtcatgttcaacttctggcgccgccgcgacattgaa
caagcttatcttgaggagctcgccggactaccaaccggttgcgtcccgtctgaagaagat
cgcgctttggtgttggaggcgctccagcagatcgatgccattctcggcgcattgaaaccc
aacgtacgtgaagtgtttttgctgagccagctgcatgagctgacctaccgtgacatcggg
gaacgtctgaacatgcctgtcatcacagtgcgccgttacatgacccaagccatgcgcgca
tgctggctggccagcatccattaa
DBGET
integrated database retrieval system
