Herbaspirillum sp. DW155: HBDW_15870
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Entry
HBDW_15870 CDS
T10195
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hew Herbaspirillum sp. DW155
Pathway
hew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HBDW_15870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hew03019
]
HBDW_15870
Enzymes [BR:
hew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HBDW_15870
Messenger RNA biogenesis [BR:
hew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HBDW_15870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
BEV14799
LinkDB
All DBs
Position
complement(1782731..1784281)
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AA seq
516 aa
AA seq
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MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL
QRLSTMPRQKINGHLPIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQI
TLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPP
KRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLAHL
IKTHQWKQVLVFTRTKHGANKLVEQLARDGITAMAIHGNKSQSARTKALAEFKDGKLTAL
IATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDERDLLHD
IERFIKREIPVEVIAGFEPDPTAKPQPIQLRSGQGRHQNGGGRGGQRSAPRKPAGSGNAA
APKPAGGNAGHGQAAKPRTAANGNGNGNAARGQGGRGNGGGNGSNGGNAGNGGNNANRAP
KPANANSQPRNAGQQQRQGGPRPSALTHGGQRAAGK
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttccgcgctcggcttgtccgacgaaatcgttcgtgccgtttccgaacaaggc
tatacctccccgaccccgattcaggcccaggccgtccccgcagtgctctccggcggtgac
ctgctggccggcgcccagaccggcaccggcaagaccgccggttttaccctgccgctgctg
caacgcttgtccaccatgccgcgccagaagatcaacggccacctgccgatccgcgcgctg
atcctggcgcccacccgcgaactggccgcccaggtcgaagaaagcgtgcgccagtacggc
aagtatttgccactgacttcggcctgcatcttcggcggcgtcggcatcaatccgcagatc
accctgttgaagcgcggcgtggacatcctggtcgccacccccggtcgcctgctggatcac
atgcagcaaggtaccgtgaacctgcagcacatccagattctggtgctggacgaagccgac
cgcatgctggacatgggcttcatccgcgacatccgcaaggtgctggccgccctaccgccc
aagcgccagaacctgctgttctcggccaccttcgccgatgaaatcaagaagctggccgac
agcctgttgaacaacccggccctgatcgaagtggcccgccgcaattccaccgtggaagtg
atcgcgcaaaagatccaccctgtcgaccgcgacaagaagcaccccatgctggcgcacctg
atcaagacccaccagtggaagcaggtgctggtcttcacccgcaccaagcacggcgccaac
aagctggtcgaacagctggcccgcgacggcatcaccgccatggcgatccacggcaacaag
agccagtcggcccgcaccaaggcgctggctgaattcaaggacggcaagctgaccgccctg
atcgccaccgacatcgccgcacgcggcatcgacatcgaccagttgccgcacgtggtcaac
tatgacctgcccaacgtgcccgaagattacgtccaccgcatcggccgcaccggccgcgcc
ggcgctaccggcgaagccgtgtcgctggtctgcgtggacgaacgcgacctgctgcacgac
atcgagcgtttcatcaagcgcgaaatcccggtggaagtgatcgccggcttcgaacccgat
ccgaccgccaagccgcaaccgatccaactgcgcagcggccagggccgtcaccagaacggt
ggcgggcgcggcggtcagcgcagcgccccgcgcaagccggccggcagcggcaatgcggca
gcgcccaagccggccggtggcaacgccggtcatggccaggccgccaagccgcgcacggca
gccaatggcaacggtaacggcaatgccgcccgtggccagggtggacgtggcaatggcggt
ggcaatggcagcaatggcggcaatgccggcaacggcggcaacaatgccaaccgcgcaccc
aagccggccaatgccaacagccagccgcgcaatgccggccagcagcagcgccagggtggt
ccgcgtccgtcggccctgacccacggcggccagcgcgcagcgggcaagtaa
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