Herbaspirillum sp. DW155: HBDW_29420
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Entry
HBDW_29420 CDS
T10195
Name
(GenBank) type I secretion system permease/ATPase
KO
K11004
ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
Organism
hew Herbaspirillum sp. DW155
Pathway
hew02010
ABC transporters
hew03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
hew00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
HBDW_29420
03070 Bacterial secretion system
HBDW_29420
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hew02000
]
HBDW_29420
02044 Secretion system [BR:
hew02044
]
HBDW_29420
Transporters [BR:
hew02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
HBDW_29420
Secretion system [BR:
hew02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
HBDW_29420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
Peptidase_C39
SMC_N
ABC_ATPase
AAA_18
AAA_29
AAA_16
AAA_22
NB-ARC
PRK
MeaB
RsgA_GTPase
AAA_21
nSTAND3
AAA_24
Motif
Other DBs
NCBI-ProteinID:
BEV16154
LinkDB
All DBs
Position
complement(3241855..3244029)
Genome browser
AA seq
724 aa
AA seq
DB search
MNESHNDPGQAVVDSGLLCLIMLAKLHGIAADAQQLQHRFGRRPFGVQNILLGARTLGMK
ARCIRQHPARLERTPLPAIGIDHEGRFFVLAKIESEQGQPGAGARMLIQQPGQPPQVMSR
AEFSAFWCGQVILMTSKATYASESARFDFTWFIPAVVKYRKVLGEVLLISLVLQIIGLVT
PLFFQVVMDKVLVNHAMMTLNVIAVGLIAATIFEALLNGIRTAIFARASSKIDVELGARL
FAHLLSLPLAYFQVRRAGDSIARVRELENIRSFLTSNAMTLVLDLVFSFIFLAVMLWYSV
PLSLIVLASIPVYLLLSLIFTPLLRARLNDKFNKSAENQSFLVETLTGMDTVKAMAVEPQ
WQRKWDQQLAGYVAAGLTTTNISLLASGGVTLVSKLVGVGIMWLGALQVVDNALSVGELV
AFNMLAGQVAAPILRLAQLWNDFQQVGISMSRLADVLDARSEVAGHRTRLPRVTGAIAFE
RVSFRYRPETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYVCESGRISVDGQ
DISIIDTASLRQQIGVVLQENTLFSRSIRDNIALVDPSASIEEVIAAARLAGAHDFICEL
PEGYDTLVGEQGTGLSGGQRQRIAIARALISNPGILIFDEATSALDYESEKIIQDNMRQI
CAGRTVLIIAHRLSAVREADRILVMERGSVVESGRHDELLGLANGIYAHLHALQAGKPLQ
GESA
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagagccataacgaccccggccaggcagtcgtggacagcggtttgctgtgcctg
atcatgctggccaagctgcacggcatcgccgccgatgcgcagcaattgcagcaccgcttc
ggccgccggcccttcggtgtgcagaacatcctgctgggcgcgcgcacgctgggcatgaag
gcgcgctgcatccgccagcatcccgcgcgcctggagcgcacccccttgccggccatcggc
atcgatcatgagggccgtttctttgtgctggccaagatcgaatccgagcaaggccagccg
ggtgcgggcgcgcgcatgctgatccagcagccgggccagccgccccaggtgatgtcgcgt
gcggaattctccgccttctggtgcggccaggtcatcctcatgacgagcaaggcgacttac
gccagtgaatcggcgcgcttcgatttcacctggttcattccggccgtggtcaagtaccgc
aaggtgctcggcgaggttttgctgatctcgctggtgctgcagattatcgggctggtcacg
cccttgttcttccaggtggtgatggacaaggtgctggtcaatcacgccatgatgaccctg
aacgtgattgccgtcgggctgatcgcggccaccattttcgaggcactgctcaatggcatc
cgtaccgccatcttcgccagggccagcagcaagatcgatgtggaactgggggcgcgcctg
tttgcccatctgctgagcctgccgctggcctacttccaggtccgccgtgcgggcgattcc
atcgcccgggtacgcgagctggaaaacatccgcagcttcctcaccagcaatgccatgacg
ctggtactggatctggtgttttccttcatcttcctggcggtgatgctgtggtacagcgtg
ccgctgagcctgatcgtgctggcttccattccggtgtacctgctgctgtcactgatcttc
acaccgctgctgcgcgcccgtctgaacgacaagttcaacaagagcgccgagaaccagtcc
ttcctggtggagaccctgaccggcatggataccgtcaaggccatggcggtcgagccgcag
tggcaacgcaagtgggatcagcaactggccggctacgtagccgctgggctgaccaccacc
aacatcagtctcttggccagcggcggcgtgacgctggtgagcaagctggtcggcgtgggc
atcatgtggctgggggcacttcaggtggtcgacaacgccttgtcggtcggtgagctggtg
gccttcaacatgctggccgggcaggtcgccgcgcccatcctgcggctggcgcaattgtgg
aacgacttccagcaggtcggtatttccatgagccggctggctgacgtgctcgacgcccgc
agtgaagtggcggggcatcgcacgcgcctgccgcgcgtgaccggggcgattgctttcgag
cgggtgagctttcgctatcgtcccgaaacgccggaggtgattcgcgggctgtccctgcag
atccggccgggcgaggtcatcggcatcgtcggtcgttccggttccggcaagagcaccctg
gccaagctggtgcagcggctgtatgtctgcgagagcgggcgcatcagcgtggacggccag
gatatttccatcatcgataccgcctcgttgcgtcagcagatcggcgtggtgctgcaggag
aatacactgttctcacgctccatccgcgacaacatcgccctggtcgatccgtcggcctcc
atcgaggaagtgatcgccgccgcccggctggcgggcgcgcatgacttcatctgcgagctg
cccgagggttatgacacgctggtcggcgagcagggcacgggcctctccggtggacagcgc
cagcgcattgccattgcgcgcgcgctgatcagcaatcccggcatcctgatcttcgacgaa
gccaccagcgcgctggactatgaatccgaaaaaatcatccaggacaacatgcgccagatc
tgcgccggacgcaccgtgctcatcattgcgcaccggctctcggccgtgcgcgaggccgac
cgcattcttgtgatggagcgcggcagcgtggtcgagagtggccgccatgatgagttgctg
gggctggccaacggcatctatgcccacctgcatgcgctgcaggcaggcaagccgctacag
ggagaatcagcatga
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