Herbaspirillum sp. DW155: HBDW_36860
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Entry
HBDW_36860 CDS
T10195
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hew Herbaspirillum sp. DW155
Pathway
hew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HBDW_36860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hew03019
]
HBDW_36860
Enzymes [BR:
hew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HBDW_36860
Messenger RNA biogenesis [BR:
hew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HBDW_36860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
AAA_22
MerR-DNA-bind
P-loop_SecA
Collagen
Motif
Other DBs
NCBI-ProteinID:
BEV16898
LinkDB
All DBs
Position
complement(4101919..4103382)
Genome browser
AA seq
487 aa
AA seq
DB search
MSDTTSASAAPAAPAVRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAA
QTGTGKTAGFSLPIIQRLLAHASHSASPARHPVRALILTPTRELADQVADNVKAYSRFTP
LRSTVVFGGVDMAPQTATLRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLD
MGFLPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQT
IYKVEEAAKADAVSFIIRQRELKQVIVFSNTKIGASRLARTLLAEGVKASAIHGDKTQSE
RMAALESFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASG
DAISLFCDKDERLLVDIEKLIKKKFERAELAGFAPRMRADRGERGERGERSERGERAERG
DRSDRGERSRGSRDGAAPSGRREKVDPWFLKPYEPSATETVSTKPELPKNNRPKPKVAAL
LGGIPKR
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacaccacgtccgcgtccgcagcaccggctgcacctgccgtccgcttcgaagat
ttcggcctttcgcccgatatcctcaaagccctggccgaacaaggctacgtccacccgact
ccgatccaggcccaggccattcccgtggtgctgcaaggccgcgatgtgatgggggcggcc
cagaccggcaccggcaagaccgccggcttctcgctgccgatcatccagcgcctgctggcg
cacgccagccacagcgcttcgccggcccgccatccggtgcgcgccctgatcctgaccccg
acgcgcgaactggccgaccaggtggcggacaatgtgaaggcttattcacgcttcaccccg
ctgcgctctaccgtcgtcttcggcggcgtggacatggctccgcaaaccgcgaccctgcgc
gccggcgttgaaatcgtcatcgccaccccgggccgcctgctggatcacgtgcagcaaaag
accgtgaacctgtcgcagacccagatcctggtcatggacgaagccgaccgcatgctggac
atgggtttcctgccggacctgcagcgcatcatcaacctgctgcccaagcagcgccagaac
ctgctgttctcggccaccttctcgcccgagatcaagaagctggccgccagcttccagaac
aaccctgtgaccatcgaggtggcgcgcagcaacgccaccgccgaaaacgtcacccagacc
atctacaaggtggaggaagccgccaaggccgatgcagtcagcttcatcattcgccagcgc
gaactgaagcaagtgatcgttttctccaataccaagatcggcgcttcgcgcctggcgcgc
acattgttggccgagggtgtgaaggcttctgccatccacggcgacaaaacccagtccgag
cgcatggccgcactggagtccttcaagcaaggtcagatcgaagtgctggtcgccaccgac
gtggccgcacgcgggctggacatcgccgagctgccctgcgtgatcaactatgacctgccc
tacaacgccgaagattatgtgcaccgcatcggtcgcaccggccgtgccggtgcctcgggt
gatgccatctcgctgttctgtgacaaggatgagcgtctgctggtcgatatcgaaaagctg
atcaagaagaaattcgagcgcgcggaactggccggctttgcaccgcgcatgcgggccgat
cgtggtgaacgtggcgagcgtggtgagcgttcggaacgcggcgagcgcgctgagcgtggc
gaccgtagtgatcgcggtgagcgcagccgtggcagccgcgacggggccgcgccgtcgggc
cgacgtgaaaaggtcgatccctggttcctcaagccctatgagcccagcgccaccgagacc
gtctccaccaagccggagttacccaagaacaaccgtcccaagcccaaggtcgcagccttg
ctgggcggcatccccaagcgctga
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