Herbaspirillum sp. DW155: HBDW_44330
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Entry
HBDW_44330 CDS
T10195
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
hew Herbaspirillum sp. DW155
Pathway
hew00300
Lysine biosynthesis
hew00470
D-Amino acid metabolism
hew01100
Metabolic pathways
hew01110
Biosynthesis of secondary metabolites
hew01120
Microbial metabolism in diverse environments
hew01230
Biosynthesis of amino acids
Module
hew_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
hew00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
HBDW_44330 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
HBDW_44330 (dapF)
Enzymes [BR:
hew01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
HBDW_44330 (dapF)
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Paralog
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
DUF8598
Motif
Other DBs
NCBI-ProteinID:
BEV17645
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Position
4907486..4908349
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AA seq
287 aa
AA seq
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MKIKFTKMHGAGNDFVVLDAVTQAISLTPAQWQFIADRRFGIGADQMLVVEKAQGAGVDF
RYRIYNADGGEVEQCGNGARAFVRFVTEKGLTDKRAIRVETMSGVIEPRLEEDGQITVDM
GAPILTPADVPFDSRNLQHRSQAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVQDSEAAP
VLVDGPLIERHERFPKRVNAGFMQVVDRHHINLRVYERGAGETLACGTGACAAVVAGIRR
GLLDSPVAVQTHGGVLNIAWAGPGEPVMMTGPAVTVFEGEIELPDSL
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcaaatttaccaagatgcacggcgccggcaacgatttcgtcgtgctcgatgcc
gtcacccaggccatttcgctcacccccgcccagtggcagttcatcgccgatcgccgcttc
ggcatcggtgccgaccagatgctggtggtggagaaggcgcaaggcgccggtgtggatttc
cgttatcgcatctacaacgctgatggcggagaagtcgaacaatgcggcaatggtgcgcgc
gccttcgtgcgcttcgtcaccgaaaagggcctgaccgacaagcgcgccatccgcgtggaa
accatgtccggcgtgatcgagccgcgcctggaagaggatggccagatcaccgtggacatg
ggcgcgccgattctcacgcccgccgacgtccccttcgacagccgcaatctgcagcaccgc
agccaggccgaagacacgctctggccgctggatgtggccggcaagaccacgtggatctcg
gtagtgtcgatgggcaacccgcatgcggtacaggtggtgcaagacagcgaagccgccccg
gtactggtggacggtccgttgatcgagcgccatgaacgcttccccaagcgcgtcaatgcc
ggcttcatgcaggtggtagaccgccaccacatcaatctgcgcgtctatgagcgtggcgcg
ggcgagaccctggcctgcggcaccggggcctgtgcggcggtggtggcgggtatccgccgt
ggcttgctggattcgccggtggcggtccagacccacggcggcgtgctcaacatcgcctgg
gccgggccgggtgaaccggtgatgatgaccggaccggcggtcaccgtgtttgaaggcgaa
atcgaactgcctgattcgctctga
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