Herbaspirillum sp. DW155: HBDW_48010
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Entry
HBDW_48010 CDS
T10195
Symbol
mrdA
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
hew Herbaspirillum sp. DW155
Pathway
hew00550
Peptidoglycan biosynthesis
hew01100
Metabolic pathways
hew01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
hew00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
HBDW_48010 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
HBDW_48010 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
hew01011
]
HBDW_48010 (mrdA)
Enzymes [BR:
hew01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
HBDW_48010 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
hew01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
HBDW_48010 (mrdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
BEV18013
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Position
5314702..5316672
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AA seq
656 aa
AA seq
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MTEFKNTAHELRLFRMRLLAASAVVLVCFSLLLARFLWLQVVRHDAYAAQAEENRISVVP
IVPNRGLILDRNGVVLARNYSAYTLEITPSKIKTNIDDLIDELGTIVEIQPRDRRRFRRL
QEESKNFESVPIRTRLTDEEVAKFTAQRYRFPGVEVQARLFRQYPYGKTAAHVIGYIGRI
SQRDAERIADSDDEANYNGTDYIGKEGLEKSYETQLHGTTGYEEVEISASGRAVRSLSRT
PATPGKNLILSIDIELQKVVEEAFGDQKGALVAINPATGDILAYVSQPSYDPNLFVEGID
QQSWDELNKSPDRPLLNRPLSGLYSPGSTYKPFMALAALELGKRRPQDAIRDPGFFVLGN
HRFRDDKEGGHGVVDMYRSIVVSCDTYYYMLANDMGVNAIHDFMKPFGFGQITGIDLEHE
KRGILPSTDWKRTAFRKPEQKRWIAGDTVSLGIGQGYNSFTPLQLAQATAILANNGVVMK
PHLVKIIEDGVSHERTETVPKESYRIPLNQENIDFIKRAMVGVVKEGTGAAAFRGAPYES
GGKTGTAQVINIAKNQKYDSKKLSRIFHDNGLYIGFAPADAPRIAIAAVVENGGWGAGVA
APLVRKAMDYFMLGKRPNEPIKSVAPNEPVSADTPVEGPTTEESATTPTVQPDVQE
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaattcaagaataccgcgcatgagctgaggctgttccggatgcgcctcctggca
gccagcgccgtggtgctggtgtgcttcagcctgctgctggcgcgcttcttgtggctgcag
gtggtgcgccacgatgcctatgccgcccaggccgaggaaaaccgcatctcggtggtgccc
atcgtgcccaaccggggcctgatcctggaccgcaacggcgtggtgctggcccgcaactat
tcggcctatacgctggaaatcacgccctccaagatcaagaccaacatcgatgacttgatc
gacgagctgggcaccatcgtggaaatccagccgcgtgaccgccgccgcttccgccgcctg
caggaagaatccaagaacttcgaaagcgtgcccatccgcacccgcttaaccgatgaggaa
gtggccaagttcaccgcgcagcgctatcgcttccccggcgtggaggtgcaggcgcgcctg
ttccgccagtatccgtacggcaagaccgccgcgcacgtgatcggctacatcggccgcatc
agccagcgcgatgccgagcgcatcgccgactccgatgacgaagccaactacaacggcacc
gactacatcggcaaggaaggcctggaaaagagctacgagacccagctgcacggcaccacc
ggctacgaggaagtggaaatctcggccagcggacgggcggtgcgctcactctcgcgcacc
ccggccacgccgggcaagaacctgatcctgtccatcgacatcgagctgcagaaggtggtg
gaagaagccttcggcgaccagaagggtgcgctggtggcgatcaacccggccaccggcgac
atcctggcctacgtctcgcagccctcctacgaccccaacctgttcgtcgaaggcatcgac
cagcagagctgggatgagttgaacaaatcgcccgaccggccgctgctgaaccggccgctg
tcgggcctgtattcgcccggttcgacctacaaacccttcatggcgctggccgcgctggag
ctgggcaaacgccgtccgcaggatgccatccgcgatcccggcttcttcgtgctgggcaac
caccgtttccgcgatgacaaggaaggcggccacggtgtcgtcgacatgtaccgctccatc
gtggtgtcgtgcgacacctactactacatgctggccaacgacatgggggtcaatgccatc
catgacttcatgaagcccttcggcttcggccagatcaccggcatcgacctggaacacgaa
aagcgcggcatcctgccctccaccgactggaagcgcaccgccttccgcaaacccgaacag
aagcgctggatcgccggtgataccgtgtcgctgggcatcggccagggctacaacagcttc
accccgctgcaactggcgcaggccacggccatcctggccaacaacggcgtggtgatgaag
ccgcacctggtcaagatcatcgaggatggcgtcagccacgagcgcaccgagaccgtgccc
aaggaaagctatcgcattcccctgaatcaggaaaacatcgacttcatcaagcgcgccatg
gtcggcgtggtcaaggaaggcacgggtgccgccgccttccggggggcaccctacgaatcg
ggcggcaagaccggtacggcgcaggtgatcaacatcgccaagaaccagaagtatgattcg
aagaagctctcgcgcatcttccacgacaatggtctctatatcggctttgccccggccgat
gcgccgcgcatcgccattgccgcggtggtcgagaacggtggctggggtgccggcgtggcc
gcgccgctggtgcgcaaggcgatggactacttcatgctgggcaagcgccccaacgagccg
atcaagtcggtggcgcccaatgagccggtgagcgccgatacgcccgtcgaaggcccgacc
accgaggaaagcgccaccacgccgacggtccagccggatgtgcaggaatga
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