Herbaspirillum sp. DW155: HBDW_48610
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Entry
HBDW_48610 CDS
T10195
Name
(GenBank) sigma 54-interacting transcriptional regulator
KO
K07715
two-component system, NtrC family, response regulator GlrR
Organism
hew Herbaspirillum sp. DW155
Pathway
hew02020
Two-component system
hew02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
hew00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HBDW_48610
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HBDW_48610
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
hew02022
]
HBDW_48610
Two-component system [BR:
hew02022
]
NtrC family
GlrK-GlrR (amino sugar metabolism)
HBDW_48610
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Paralog
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
AAA_lid_14
Sigma54_activ_2
AAA_5
AAA_16
AAA
HTH_8
AAA_2
nSTAND6
AAA_30
MCM
TIP49
OKR_DC_1_N
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
BEV18073
LinkDB
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Position
complement(5388533..5389915)
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AA seq
460 aa
AA seq
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MGKTAPLMLVDDDPDLLRLLTLRLNASGYRILAVESAEAALAQLAIALPALVVTDVRLPG
MDGLALFAEIRSRYPALPVILLTAHGTIPDAVEATTQGAFAYLTKPFDGHVLLDKVAQAL
SLSAPPQEAAEEAWRADIISRSQRIDELLAEARLVAASDASILIRGDSGTGKEVLARAIH
RASARAGKPFVAVNCGAIPEQLLESELFGHVKGAFTGAVEHREGLFQAADGGTLFLDEIG
DMPLPLQVKLLRVLQEKTVRQVGANQPAEVDVRVISATHRDLEAAMNQGHFRADLYYRLN
VVTLSLPPLEERREDIALLANHFLKTIAARSPKRLTGFAPDALEVLSLAHWPGNVRQLFN
VVEQVCALSTAPLIPASLVQRALRVPTLDLLRYAEAKQKFERDYLVRLLKLTDGNVSDAA
RLADRNRTEFYRLLQKNGLDPRRFRGGEEPVVLERQEGVI
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagactgcccccctgatgctggtcgacgatgatcccgacctgttgcgcctgttg
acgctgcgcctcaatgccagcggctaccgcatcctggccgtggaaagcgccgaggccgcc
ctggcccagctggccattgccttgccggcgctggtcgtcaccgatgtgcggctgcccggt
atggatggactggcgctctttgccgagatccgcagccgctatcccgccttgccagtgatc
ctgctgacggcccacggcaccatccctgatgccgtcgaggccaccacccagggcgccttc
gcctatctgaccaagccctttgatggccacgtgctgctggacaaggtggcccaggccctg
agcctgtccgcgccacctcaggaggcagccgaggaagcctggcgcgccgacatcatcagc
cgcagccagcgcatcgatgagctgctggccgaggcgcggctggtggcggcctcggatgcc
agcatcctgatccggggtgacagcgggaccggcaaggaggtgctggcccgcgccatccac
cgcgccagtgcgcgcgccggcaagccctttgtcgctgtcaattgcggcgccatcccggag
cagttgctggagtccgaattgttcggtcacgtgaaaggcgcatttacgggcgctgtggag
catcgtgaaggtttgttccaggcggccgacggcggcaccctgtttctcgacgaaattggc
gatatgccgcttcccttgcaggtcaagcttttgcgcgtactgcaggaaaagaccgtacgc
caggtcggcgccaaccagccggcagaggtcgacgtgcgcgtgatctcggcgacccaccgc
gacctcgaggcggccatgaaccagggccacttccgcgcggacctgtattaccggctcaat
gtggtcacgctcagcctgccgccgctggaagagaggcgtgaggatatcgccctgctggcc
aatcatttcctcaagaccatcgccgcccgctcgcccaagcgcctgaccgggtttgcgccc
gatgcgctggaagtactgagtctggcgcactggcccggcaatgtgcgccagctcttcaat
gtggtggaacaggtgtgcgcgctgtcgaccgcgccgctgatcccggcgtccctggtgcag
cgcgccttgcgggtgccgacgctggacctgctgcgttatgcggaggccaaacagaagttc
gagcgcgattacctggtgcgactgttgaagctgaccgatggcaatgtgtcagatgcggcc
cggctggcggatcgcaatcgcaccgagttctatcgcctgctgcagaagaacggcctggat
ccgcgccgcttccgtggtggcgaggagcccgtcgtgctggagcgacaggagggagtcatt
tga
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