Helicobacter pylori F57: HPF57_0120
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Entry
HPF57_0120 CDS
T01912
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hex
Helicobacter pylori F57
Brite
KEGG Orthology (KO) [BR:
hex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hex03032
]
HPF57_0120 (topA)
03400 DNA repair and recombination proteins [BR:
hex03400
]
HPF57_0120 (topA)
Enzymes [BR:
hex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HPF57_0120 (topA)
DNA replication proteins [BR:
hex03032
]
Prokaryotic type
DNA Topoisomerases
HPF57_0120 (topA)
DNA repair and recombination proteins [BR:
hex03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HPF57_0120 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF1272
Zn_ribbon_LysW
Lar_restr_allev
zf_Rg
DUF7575
Motif
Other DBs
NCBI-ProteinID:
BAJ59194
LinkDB
All DBs
Position
complement(120902..123112)
Genome browser
AA seq
736 aa
AA seq
DB search
MKHLIIVESPAKAKTIKNFLDKNYEVIASKGHVRDLSKFALGIKIDETGFTPNYVVDKDH
KELVKQIIELSKKASTTYIATDEDREGEAIGYHVACLIGGKLESYPRIVFHEITQNAILN
ALKTPRQIDMSKVNAQQARRFLDRIVGFKLSSLISSKITKGLSAGRVQSAALKLVIDKER
EIKAFKPLTYFTLDAYFEPHLEAQLISYKGNKLKAQELIDKKEAQEIKNELEKESYTISS
IIKKSKKSPTPPPFMTSTLQQSASSLLGFSPTKTMSIAQKLYEGVTTPQGVMGVITYMRT
DSLNIAKEALEEARNKILKDYGKDYLPPKAKVYSSKNKNAQEAHEAIRPTSIILEPNALK
DYLKSEELKLYTLIYKRFLASQMQDALFESQSVVVACEKGEFKASGRKLLFDGYYKILGN
DDKDKLLPNLKENDPIKLEKLESNAHVTEPPARYSEASLIKVLESLGIGRPSTYAPTISL
LQNRDYIKVEKKQISALESAFKVMEILEKHFEEIVDSKFSASLEEELDNIAQNKADYQQV
LKDFYYPFMDKIEAGKKNIISQKVHEKTGQSCPKCGGELVKKNSRYGEFIACNNYPKCKY
VKQTENANDGAKQELCEKCGGEMVQKFSRNGAFLACNNYPECKNTKSLKNTPNANEIIEG
VKCPECGGDIALKRSKKGSFYGCNNYPKCNFLSNHKPINKRCEKCHYLMSERIYRKKKAH
ECIQCKERVFLEEDDG
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaccttattattgtagaatcccccgcaaaagccaaaaccattaaaaattttttg
gataaaaattacgaagtcatcgcctctaaggggcatgttagggatttatccaaattcgct
ttaggtattaagattgatgaaacaggcttcactcctaattatgtcgtggataaagaccat
aaagagcttgtcaaacagatcatagagctttctaaaaaggcatctaccacctacatcgct
accgatgaagacagagaaggggaagcgataggctatcatgtggcgtgcttgattgggggg
aaattagagagctatcctaggattgtttttcatgagatcacgcaaaatgcgattttaaac
gctctaaaaaccccacgacaaattgacatgtcaaaagtcaatgcccaacaagccagacgc
tttttagatcggatcgtggggtttaagctcagctcgttgatttcatcaaaaatcactaaa
ggtttgagcgctgggcgggtgcaaagtgcggctttaaagcttgtgattgataaagagaga
gagatcaaagcctttaagcctttaacctacttcacgctagacgcttattttgagccgcat
ttagaagcgcaactcattagctataagggcaacaaactcaaagcccaagagcttattgac
aaaaaagaagctcaagagattaaaaacgaattagaaaaagaaagctacactatttctagt
attattaaaaaatctaaaaaatcccccacaccgccccctttcatgacttctactttacag
caaagcgcttccagtcttttaggcttttcgcccacaaaaaccatgagtatcgctcaaaaa
ttgtatgaaggcgtaaccactccgcaaggggttatgggggtgatcacttacatgaggacc
gatagcttgaatatcgctaaagaagctttagaagaagcgaggaataagattttaaaagac
tatggcaaagactacttaccccctaaagccaaagtctattccagcaagaataaaaacgcc
caagaagcccatgaagcgatcaggcccacttctattattttagagccaaacgctttaaaa
gactaccttaagtccgaagaattaaagctctataccttaatttacaaacgcttcttagct
tctcaaatgcaagacgctctttttgaaagccaaagcgtggttgtggcttgcgaaaaaggc
gagtttaaagccagtggcagaaaactcctttttgatggctattataaaattttaggcaat
gacgataaggacaaattgctccccaatttgaaagaaaacgaccccattaaattagaaaaa
ctagagagcaacgcccatgttacagaacctccagcgcgctattcagaagcgagcttgatt
aaagttttagaaagtttaggcataggcaggcccagcacctacgccccaacgatttctctc
ttacaaaacagagactacatcaaggtagaaaaaaagcaaatcagcgctttagagagcgct
tttaaggtgatggaaattttagaaaagcattttgaagaaatcgtggattccaaattcagc
gcttctttagaagaggaactagacaatatcgctcaaaataaagccgactatcagcaagtc
ttaaaggacttttactacccttttatggataaaattgaagccgggaaaaagaatatcatc
tctcaaaaagtgcatgaaaaaaccggtcaatcatgccctaaatgcggtggggaattggtc
aaaaaaaatagccgttatggggagtttatcgcttgcaacaattaccctaaatgcaaatat
gtcaaacaaactgaaaacgctaatgatggagccaagcaagaattgtgcgaaaaatgcgga
ggggaaatggtgcaaaaattcagcagaaacggggcgtttttagcttgcaacaactaccct
gaatgcaaaaacaccaaatcgttaaaaaacacccctaacgcaaacgaaataatagaaggc
gtgaaatgcccagaatgcggaggggatattgccttaaaaaggagtaagaaaggctcgttt
tatggctgtaacaattaccctaaatgcaattttttatccaaccataagcctatcaacaag
cgttgtgaaaaatgccattatttgatgagtgaaagaatctatcgcaaaaaaaaggcgcat
gaatgcatccagtgcaaagagcgcgtgtttttagaggaagatgatggctaa
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