Helicobacter pylori F57: HPF57_1077
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Entry
HPF57_1077 CDS
T01912
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hex
Helicobacter pylori F57
Pathway
hex03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPF57_1077 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hex03400
]
HPF57_1077 (uvrB)
DNA repair and recombination proteins [BR:
hex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPF57_1077 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HPF57_1077 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
AAA_7
DUF87
Microtub_bd
Kinesin
HAM1_N
SWI2_SNF2
DUF1054
Motif
Other DBs
NCBI-ProteinID:
BAJ60151
LinkDB
All DBs
Position
complement(1147198..1149174)
Genome browser
AA seq
658 aa
AA seq
DB search
MPLFDLKSPYPPAGDQPKAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTL
IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER
LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY
SRNEVVFDRGSFRATGECVDIFPVYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG
VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK
SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGL
LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS
EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT
MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKLHNITPKTVTRVLEEELK
LRDDEIKIAKALKKDKVPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLRTL
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgcctttatttgatttaaaaagcccttacccaccagcaggcgatcagccaaaagccata
gaagccttaacgaaaagcttaaaaaataacaaccattatcaaactttagtgggagttaca
gggagcggtaagacttatacgatggctaatatcatcgctaacatcaacaagcccactctg
atcatgagccataataagaccttatgcgcacagctctatagcgaatttaaggcgtttttc
ccgcataatagggtggagtattttatctcccactttgattactaccagcctgaaagctat
atccctagaagggatttattcattgaaaaagacagctctattaatgatgatttagagcgt
ttgagattgagtgcgaccacctcacttttaggttatgatgatgtgatcgtgatagcgagc
gtttcggctaattatggtttgggtaaccctgaagaatatttaaaagtcatggaaaaaatc
aaagtgggcgagaagcgtgcttataagagctttttactcaagctagtagaaatgggttat
agccgtaatgaagtggtgtttgatagggggagttttagagcgaccggagaatgcgtggat
attttccccgtttataatgacgctgaatttatcaggattgaattttttggcgatgagata
gaaaggattgctgtctttgacgctttagaaaaaaatgaaatcaaacgcttggattctgtc
atgctttatgcggccagtcagtttgccgtagggagtgagaggttgaatttagccattaaa
agcattgaagatgaactcgctttaagattgaaattttttaaagagcaggataaaatgctt
gaatacaaccgcctcaaacaacgcaccgagcatgatttagaaatgattagcgcaaccggt
gtgtgtaagggcattgaaaattacgcacgccattttacaggcaaagctcctaatgaaacg
cctttttgcttgtttgattatttagggatatttgagcgggagtttttagtcattgtggat
gaaagccatgtgagtttgccgcagtttggagggatgtatgcgggggatatgagcaggaaa
agcgttttagtggaatatggttttagattgcctagcgctttagacaaccgccctttaaaa
tttgatgaatttatccataaaaattgccagttcctttttgtgtccgctacgcccaataag
ctagaattagagctttctcaaaaaaatgtcgctgagcaaatcattcgccctacagggctt
ttagaccctaaatttgaagtacgagacagcgataagcaagtccaggatttatttgatgaa
atcaagttagtggtggctagagatgaaagggtgcttatcaccacgctcactaaaaaaatg
gcagaagaattgtgcaaatattatgccgaatggggcttgaaagcgcgttacatgcatagt
gaaattgatgcgattgaaaggaatcacatcatccgttctttaaggcttaaagaatttgac
attttaatagggatcaatcttttaagagaagggctggatttgcctgaagtctctttagta
gcgatcatggatgcggataaagaagggtttttaaggagtgaaacaagcctcattcaaacc
atggggcgagccgctagaaacgctaatggcaaggttttattatacgctaaaaaaatcacc
caaagcatgcaaaaagcctttgaaattacgagctacaggcgcactaagcaagaagagttt
aataagcttcacaatatcacccccaaaaccgttactcgtgttttagaagaggagttgaaa
ttaagagacgatgagattaaaatcgctaaagctttaaaaaaggacaaagtacctaaaagc
gaaagggaaaaaatcattaaagaactggataaaaaaatgcgagaatgcgcaaaaaatttg
gattttgaagaagcgatgcgtttgagagacgaaatcgctaaattaagaacgctttaa
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integrated database retrieval system
