Helicobacter pylori XZ274: MWE_0130
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Entry
MWE_0130 CDS
T02130
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hey
Helicobacter pylori XZ274
Pathway
hey02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hey00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MWE_0130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hey03021
]
MWE_0130
Transcription machinery [BR:
hey03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MWE_0130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
MCR_beta_N
WYL_3
Sigma70_r4_2
HTH_25
SieB
Motif
Other DBs
NCBI-ProteinID:
AFJ81104
LinkDB
All DBs
Position
complement(109589..111589)
Genome browser
AA seq
666 aa
AA seq
DB search
MKKKANEEKAPKRAKQEAKAEAAQENKAKENNKTKESKIKEAKAKELVPVKKLSFNEALE
ELFANSLSDCVSYESIIQISAKVPTLAQVKKIKELCQKYQKKLVSSSEYAKKLNAIDKIK
KTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLSKDEEIELSKQI
RLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDENSVSDSKKDDDSE
EDEENEERKKVVSEKDRKRVEKVQESFKALDKAKKEWLKALEAPIDEKEDELVRLLTLAY
KRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYKLPLFNDTLIANHKK
ILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLDPNKLKEILEQIKRG
KLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFS
TYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVG
LSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVL
DQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRIL
RNYLRI
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaagctaacgaagaaaaagcccccaaaagagctaaacaggaagccaaagca
gaagccgcacaagaaaataaagccaaagaaaacaataaaactaaagaaagcaaaatcaaa
gaagctaaagcgaaagaacttgttcctgttaaaaagcttagttttaatgaagcgttagaa
gaattgttcgctaattccttaagcgattgcgtttcttatgagtctatcattcaaatcagc
gcgaaagtccccactctagcccaagtcaaaaaaatcaaagaattgtgccaaaaataccaa
aagaaattagtcagctcttcagaatacgctaaaaaactcaatgcgattgacaagattaaa
aaaaccgaagaaaaacaaaaagttttagatgaagaattagaagatggctatgactttttg
aaagaaaaggattttttagagtggagcagaagcgacagcccggtgcgcatgtatttgcgc
gaaatgggggatataaaacttttaagcaaagatgaagagattgaattgagcaagcaaatc
cgcttgggcgaagacattattttagatgcgatttgctcggtgccgtatttgattgatttt
atttatgcgtataaagacgctttaatcaatcgtgaaagaagggttaaagagctttttagg
agctttgatgatgacgatgaaaatagcgtgagcgattctaaaaaagatgatgacagcgaa
gaagatgaagaaaacgaagaaaggaaaaaagtcgtttctgaaaaagacaggaagcgtgtg
gaaaaggttcaagaaagctttaaagccctagataaggctaaaaaagaatggctcaaagcc
cttgaagcccctatagatgaaaaagaagatgagctagtgcgtttattgaccctggcttac
aaacgccaaacgctcaaagacagactctatgatttagaacctaccagcaaactgattaat
gaattagtcaaaacgatggaaaccactttaaaaagtggcgatgggtttgaaaaagagttg
aaacgcttggaatacaaactgcccttattcaatgacaccctaatcgctaaccataaaaaa
atccttgctaacatcactaacatgactaaagaggacattatcgctcaagtgccagaagcg
actatggtgagcgtgtatatggatctcaaaaagctttttttgactaaagaagcgagcgaa
gagggctttgatttagaccctaacaagctaaaagaaattttagagcaaatcaaaagaggg
aaattgatttccgatcgcgctaaaaacaaaatggctaaatccaatttaaggttggtggtg
agcatcgctaaacgattcacgagcagaggcttaccattcttggatttgattcaagagggt
aatattggcttgatgaaagcggtggataaatttgagcatgaaaagggcttcaagttttcc
acttatgcaacttggtggatcaaacaagctatcagcagagccatagccgatcaagcccgc
actatccgcatccccattcacatgattgacaccattaatcgcatcaataaagtcatgcgc
aaacacattcaagaaaacggcaaagagcctgatttagaggtggtagctgaagaagtgggg
ctttcgttggataaagtgaagaatgtgattaaggttactaaagagcctatcagtttggaa
accccagtcggcaatgatgatgacggcaaatttggggatttcgtggaagataaaaatatc
gttagctccattgatcacatcatgcgcgaagatttgaaagcacaaattgaaagcgttttg
gatcagttgaatgagcgagaaaaagcggtgattcgcatgcgttttgggcttttagacgat
gaaagcgatcgcactttagaagaaatcggcaaggaattgaatgttactagagaaagggtg
cgccagattgaaagctctgcgattaaaaaattgagaagcccgcaatacgggcgcatttta
agaaactacttgcgcatttga
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