Helicobacter pylori XZ274: MWE_1393
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Entry
MWE_1393 CDS
T02130
Name
(GenBank) DNA-directed RNA polymerase subunit beta/beta'
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hey
Helicobacter pylori XZ274
Pathway
hey03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hey00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MWE_1393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hey03021
]
MWE_1393
03400 DNA repair and recombination proteins [BR:
hey03400
]
MWE_1393
Enzymes [BR:
hey01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MWE_1393
Transcription machinery [BR:
hey03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MWE_1393
DNA repair and recombination proteins [BR:
hey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MWE_1393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AFJ82095
LinkDB
All DBs
Position
complement(1268167..1276839)
Genome browser
AA seq
2890 aa
AA seq
DB search
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKEGKESGIEKVFKSIFPIQ
DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMEFDLKDPQGKVILLAGKKLTSRKIKELKESHLEWVEYPMDILLNRHLA
EPVMVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFSADSESLKL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEK
IIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQIPI
VKVGDKVGAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDIFTS
THIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYE
EEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASIN
RFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIASMLEGKTKDFAKELRAKMLEIANAINEKDPLTIHVLESCSDEE
LLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDG
APKPIVIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRY
EDRGFVAQMGGEAIKDLLEEIDLIALLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVL
VDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMSAIAQDKEGFNSIYMMADSGARGSAA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNE
ILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKVPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELRIETVYEEIVVSVKNGEQEAKFVLRRSDIVKPSELAG
VGGKIEGKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYASELLVRDNDPIAQDVYAK
EKGAIKYYVLEANHLERTHGIKKGDIVSEKGLFAVIADDNGREAARHYIARGSEILIDDN
SEVGANSVISKPTTNTFKTIATWDPYNTPIIADFKGKVGFVDVIAGVTVAEKEDENTGIT
SLVVNDYIPSGYKPSLFLEGANGKEVRYFLEPKTSIAISDGSSVEQAEVLAKIPKATVKS
RDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRSMDYFV
DKGKQILVHADEFVHAGEAMTDGVVSSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIV
IRTLEDSPKF
NT seq
8673 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccaaca
gatttagaagtccctaatttattattattacaacgagacagctatgattctttcttgtat
tccaaagagggtaaagagagcgggattgaaaaggtttttaaatccattttccctatccaa
gatgagcataaccgcatcactttagaatacgcgggttgcgaatttggcaagtctaaatac
actgttagagaagcgatggagaggggcattacctactctatcccccttaaaattaaagtg
cgcttgatcttgtgggaaaaagacaccaaaagtggcgaaaagaacggcattaaggatatt
aaagaacaaagcatttttattcgtgagatccctttgatgacggaacgcacttcattcatt
atcaatggggtggagcgcgtggtcgtcaatcaactccacagaagccccggtgtgattttc
aaagaagaagagtccagcacttctttaaacaagctcatttacacagggcaaatcatccct
gataggggttcgtggttgtattttgaatacgattctaaagatgttttatacgctcgtatc
aacaaacgccgtaaagtgcctgttaccattttattcagggcgatggattatcaaaaacaa
gacattatcaaaatgttctacccgcttgttaaagtgcgttatgaaaacgataaatatttg
atcccatttgcctcattagacgccaatcaaagaatggaatttgacttgaaagatcctcaa
ggcaaggttattcttttagcaggaaaaaagctcacttcaagaaagattaaagagcttaaa
gaaagccatttagagtgggtggaataccctatggatattttactcaatcgccatttagct
gagcctgttatggtagggaaagaagtcttattggacatgctcactcagctagataaaaac
aaattagaaaaaatccacgatttaggcgtgcaagaatttgtgatcatcaacgatctagcg
ttagggcatgacgcttccattatccattctttttcagccgattctgagtctttgaaatta
ctcaagcaaacggaaaaaattgatgatgaaaacgctctagcggcgattcgtatccataag
gttatgaagccaggcgatcccgttacgactgaagtggctaagcagtttgtcaaaaaactt
ttctttgatccagaacgctatgatttgaccatggtggggcgtatgaaaatgaatcacaag
ttaggcttgcatgtgcctgattacattacgactttaacgcatgaagatattatcaccacc
gttaaatacctcatgaaaatcaaaaacaatcagggcaagattgacgacagagatcatttg
ggtaatcgtaggatcagggcggtaggggaattattggccaatgaattgcattcaggctta
gtgaaaatgcaaaagaccattaaagacaagctcactaccatgagcggggcttttgattcg
ctcatgccccatgacttggtcaattctaaaatgatcacaagcaccatcatggaatttttc
atgggcggtcagctctcgcaatttatggatcaaactaaccccttgagtgaggttacgcac
aaacgccgcctttcagcgctcggtgaagggggattggtgaaagacagggtagggtttgaa
gctagggatgtgcaccccacgcattatggccgaatttgtcccattgagaccccagaaggt
caaaacatcggcctgatcaacaccctttccactttcacgagagtgaatgatttaggcttt
attgaagccccttataaaaaggttgtggatggcaaggtagtgggtgagacgatttatttg
accgctattcaagaagacagccacatcatcgctccagcaagcacccccattgatgaagaa
ggtaatattttaggcgatttgattgaaacgcgcgtggaaggcgagatcgttttaaacgaa
aaaagcaaagtaaccttaatggatttaagctctagcatgctagtaggggtcgctgcatcg
ctcattcctttcttagagcatgatgacgccaaccgcgccttaatggggactaacatgcag
cgccaagcggtccccttattaagaagcgacgctcccattgtaggcacagggattgaaaaa
attatcgctagggattcttggggagcgatcaaagccaatcgcgcaggcgttgtagaaaaa
attgattctaaaaatatttatattttaggcgaaggcaaagaagaagcctatattgatgcg
tattctttgcaaaaaaacttgcgcactaaccaaaacaccagtttcaatcaaatccctatc
gttaaagtgggcgataaagtgggagctgggcaaatcatcgctgatggccctagcatggat
agaggcgagttagcgttagggaaaaatgtgcgtgtggcgttcatgccttggaatggctat
aactttgaagacgctatcgtggtgagtgagcgcatcactaaagacgatattttcacttcc
acccacatttatgaaaaagaagtggatgctagggagcttaagcatggcgtggaagaattt
accgctgacattcctgatgtgaaagaagaagcgctcgctcatcttgatgaaagcgggatc
gttaaagtgggcacttatgtgagcgctggcatgattttagtgggtaagacttctcctaag
ggcgagattaaaagcacgcctgaagaacggcttttaagggctatttttggggataaagcc
gggcatgtggtcaataagagtttgtattgccccccaagcttggaaggcacggtgattgat
gtgaaagtcttcactaaaaaaggctatgagaaagacgcgcgggttttgagtgcgtatgaa
gaagaaaaagccaagcttgatatggagcattttgatcgcttgaccatgctcaatagagaa
gaattgttacgcgtcagctcgctcctttctcaagcgattttagaagagcctttcagccat
aatggcaaggactataaagagggcgatcaaatccctaaagaagaaatcgcttcaatcaac
cgcttcactttggctagtttggtgaaaaagtattctaaagaagtgcaaaaccactatgaa
atcactaaaaacaatttcttagagcaaaaaaaagttttgggcgaagagcatgaagaaaag
ctttctattttagaaaaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacgaaagcttaaagtgggcgataaaatggcaggaaggcatgggaat
aaagggattgtgtctaatatcgtgccggttgcggatatgccttatactgctgatggcgag
cctgtagatattgtcttaaaccctttaggcgtgccaagccgcatgaatatcgggcagatt
ttagaaatgcatttaggcttagtggggaaagaatttgggaaacaaatcgctagcatgcta
gagggtaaaaccaaagattttgccaaagaattgcgcgctaaaatgctagaaatcgctaac
gccattaatgaaaaagaccccttgacaatccatgtgcttgagagttgttctgatgaagag
cttttggaatacgcaaaagattggagcaagggcgttaagatggctatccctgtgtttgaa
ggcatctcgcaagaaaaattttataagctatttgaattagccaagatcgctatggatggc
aaaatggatctgtatgatgggcgcacaggcgagaaaatgagggagcgcgtgaatgtgggc
tacatgtatatgatcaaactccaccatttagtggatgaaaaagtccatgccagaagcaca
ggtccttatagcttggtaacgcaccagcctgtggggggtaaagcgctctttgggggtcaa
aggtttggggaaatggaagtgtgggcgctagaagcttatggtgcagcgcacactctaaaa
gaaatgctcaccattaaatccgatgatattagaggcagagagaacgcttatagggctatc
gctaaaggtgagcaagtgggcgagagtgaaatccctgagactttttatgtcttgactaaa
gaattgcaatcgctcgctttggatattaatatttttggggacgatgtggatgaagatgga
gcgcctaaacccattgtcattaaagaagatgacaggcctaaagactttagctctttccag
ctcacgctagccagccctgaaaaaatccattcttggagttatggggaagttaaaaagcca
gaaacgatcaattatcgcaccctaaaacctgaacgagacggcttgttttgcatgaaaatc
tttggccccactaaagattatgaatgcttgtgcggtaaatacaaaaagcctcgcttcaaa
gacattggcacatgcgaaaaatgcggcgtggcgatcacgcactccaaagtcaggcgtttt
agaatggggcatattgaattagccactcctgtagcgcatatctggtatgtcaattccttg
cctagccgtatcggcacgcttttaggcgttaagatgaaagacttagagcgcgtgttgtat
tatgaagcttatatcgttaaagaaccaggcgaagccgcttatgacaacgaaggcactaag
cttgtgatgaaatacgatattttgaatgaagagcagtatcaaaatatctcacgaagatac
gaagacaggggctttgtagcgcaaatgggcggtgaagcgatcaaggatttgctagaagaa
attgatttgatcgccttattgcagagtttgaaagaagaagtgaaagacaccaattccgat
gcgaaaaagaaaaaactcattaagcgtttgaaagtggtagaaagctttttaaattctggt
aacaggcctgagtggatgatgctcacggttttaccggtattgccgccggatttaaggcct
ttagtcgcactagatggcgggaagtttgcagtcagcgatgtgaatgaattgtatcgtcgt
gtcatcaatcgtaaccaacgcttgaaacgcctaatggagcttggggcaccagaaatcatt
gtgcgcaatgaaaaaaggatgttgcaagaagccgtggatgtgctttttgataacggccgc
agcaccaatgcggttaaaggggctaacaaacgccctttaaaatcgctcagtgaaatcatt
aaaggcaagcaagggcgtttcaggcaaaaccttttaggtaagcgcgtggatttttcagga
agaagcgtgattgtggttgggccaaacctcaagatggacgagtgcggattgcctaaaaac
atggcgttagaactcttcaaaccgcatttgttatccaagcttgaagagagaggctatgcc
accacgctcaaacaagctaaacgcatgattgagcaaaaaagcaatgaagtgtgggagtgc
ttgcaagaaatcacagaggggtatccggtgctactcaaccgtgctcctaccttgcacaag
caatccattcaagcgttccatccaaagcttattgatggcaaagcgatccaattgcacccg
ttagtgtgttcagcgttcaacgccgattttgacggggatcaaatggcggtgcatgtgcct
ttaagccaggaagcgatcgctgaatgcaaggtgctgatgctaagctctatgaatatcctt
ttgcccgctagcggtaaagccgtagccattcctagccaggatatggttttagggctttat
tatctttctttagaaaagagtggggtcaagggcgagcataagcttttttctagcgtgaat
gaaatcatcaccgctattgatacgaaagaattagacatccacgcaaagattagggtttta
gatcaagggaatattatcgctacgagcgcggggcgcatgatcattaagtctattttgcct
gattttatccctacggatttgtggaacagacccatgaagaaaaaagatattggcgtgctt
gtggattatgtgcataaagtcggcggtatcggcattactgcaacctttttggataattta
aaaacgcttggctttaggtatgcgactaaggctggtatttctatctctatggaggatatt
atcacgccaaaagacaagcaaaaaatggtggaaaaagccaaagtagaggttaaaaaaatc
cagcaacaatacgatcaagggttgctcactgaccaagagcgttacaataagatcattgac
acttggactgaagtcaatgacaaaatgagtaaagaaatgatgagcgctatcgcgcaagat
aaagagggctttaactctatttatatgatggcagatagcggtgcaaggggtagcgcggca
caaatccgtcagctttcagcgatgaggggccttatgacaaagccagatggcagtatcatt
gaaacgcccattatttctaactttaaagaggggttgaatgtcttagaatactttaactcc
acgcatggcgctagaaagggattagcggatacagcgttaaaaacagccaatgcggggtat
ttgacaagaaagctcattgatgtttcgcaaaatgtcaaggtggtctctgatgattgcggc
acgcatgaagggattgaaatcacggatattgcggtggggagtgagctgattgaaccttta
gaagagcgtatttttgggcgcgttttattagaagatgtgatcgatcccattacgaatgaa
atcttgctttatgcggacactttgattgatgaagagggcgctaaaaaggtggttgaagcc
gggattaaatccattacgatccgcaccccggtaacttgtaaagtgccaaagggcgtgtgc
gcgaaatgctatggtttgaatttaggcgaaggcaagatgagttatccgggtgaagcggtg
ggcgtggtagccgcgcaatctatcggggagcctggaactcagctcactttaaggactttc
catgtgggtgggacagcgagtaggagtcaggatgagcgcgaaattgtagcgagcaaagaa
ggttttgtgcgtttctacaaccttaggacttacacgaataaagagggtaaaaacattatc
gctaaccgccgtaacgcttctattttagtggtagagcctaagattaaagcgccttttgat
ggggaattacgcattgaaacggtctatgaagaaatcgttgtgagcgtgaaaaatggcgag
caagaagctaaatttgttttaagaagaagcgacattgtcaagccaagcgaattggccggc
gttggcggtaagattgaggggaaagtgtatttgccttatgctagtgggcataaggtgcat
aaggggggaagtatcgctgatattatccaagagggctggaatgtgcctaatcgcatccct
tatgcgagcgaattgctagttagggataatgaccctattgcgcaagatgtgtatgccaaa
gaaaaaggcgcaatcaaatactatgttttagaggctaaccatttagagcgcacccatgga
atcaaaaagggcgatattgtgagcgaaaaaggcttgtttgcggtgatagctgatgataat
ggtagggaagccgctcgccattatatcgctaggggttctgagatcttgattgatgataat
agtgaagtgggtgctaatagcgtgatttctaaacccacgactaacactttcaaaacgatt
gccacatgggatccttacaacacccctatcattgcggactttaaaggtaaggtgggtttt
gtggatgttatcgcaggggttacggtcgctgaaaaagaagacgaaaatactggtatcaca
agcttagtggtgaatgattacattccaagcggatacaaaccaagtttgtttttagagggg
gctaatggcaaagaagtgcgttatttcctagagccaaaaacttctatcgctattagtgat
ggctctagcgtggagcaggctgaagtgttagcgaaaatccctaaagcgaccgttaaatcc
agggatattaccgggggtcttccaagggtttcggaactctttgaagcgagaaaacccaag
cctaaagatgtggcgatcctttctgaagttgatgggattgtgagttttggcaaacccatt
cgcaataaagaacacatcatcgtaacctctaaagatggccgttccatggattattttgtg
gataagggcaagcaaattttagtgcatgctgatgaatttgtgcatgcgggagaggcgatg
acggatggagtggtttcaagccatgatattttaaggatcagcggcgaaaaagagctttat
aaatacattgtgagcgaagtccagcaagtgtatcgcaggcagggggtaagtattgcggac
aagcacattgaaatcattgtttctcaaatgctaaggcaagtgcgtattttagacagcggg
gatagcaagtttattgaaggggatttagtcagtaaaaaactcttcaaagaagaaaacgct
cgtgtgatcgctttaaaaggcgagcctgcgattgctgaaccggtgcttttagggatcact
agagcagctattgggagcgatagcatcatttcagcggcctctttccaagaaacgactaaa
gttttaacagaagccagtatcgctatgaaaaaagactttttagaagacttgaaagagaat
gtggtgttggggaggatgatccctgtgggaacgggcatgtataagaataaaaaaatcgtg
ataagaacgcttgaagatagccctaaattttga
DBGET
integrated database retrieval system
