Helicobacter pylori XZ274: MWE_1416
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Entry
MWE_1416 CDS
T02130
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hey
Helicobacter pylori XZ274
Pathway
hey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MWE_1416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hey03019
]
MWE_1416
03016 Transfer RNA biogenesis [BR:
hey03016
]
MWE_1416
Enzymes [BR:
hey01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
MWE_1416
Messenger RNA biogenesis [BR:
hey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MWE_1416
Transfer RNA biogenesis [BR:
hey03016
]
Prokaryotic type
tRNA degradation factors
MWE_1416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
S1_2
Motif
Other DBs
NCBI-ProteinID:
AFJ82111
LinkDB
All DBs
Position
complement(1288219..1290285)
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AA seq
688 aa
AA seq
DB search
MDFITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPVSEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEN
DLQVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPSISLLNQSSLDLFVSGTKE
SLNMIEMHSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGII
FNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLKEIELSLEKVK
KTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDND
AQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKE
QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDIS
GLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIMHEAKE
KIVINFSHLPATEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGNKE
RVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQNMDR
CQVVLKEGDSIRCRVISFNKGKIALDLA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggattttatcaccatcaattctagtaacaaaaccgaagaattcgctctcaaacaagtg
gccaaacaagccaccagctctctaatgtatcgcttaggaaaaaccatcattttagcgagc
gtgtgcgtggaaagagagcctgtgagtgaagattttctgcctttagtggtgcagttttta
gaaaaatcttatgcagccggaaagatcccgggcggctttgttaaaagagaaggcagagcg
caagattttgaaatcttaacctctaggcttatagacaggactttacgccctttattccct
aaagactaccgctaccctacacagatcactttaatggttttaagccatgatattgaaaat
gacttgcaagtttctgctttaaacgctgcttcagccgctctctttttatcccatatcgct
cccattaaaagcgtgagcgcttgcaggatcgctaggattgataacgaatttatcattaac
cctagcataagccttttgaatcaatccagtttggatttgttcgtgtctggcacaaaagag
agtttgaacatgatagaaatgcactctttggggcaacaattaaacgctttagaagagcct
ttaatgctaaaagctttagaattggctcaaaaaagtttgaaagaaacttgcacgctttat
gaagagattttcacgccccaccaaaacgagctgcttttcaaagagagccaaggaataatt
tttaatgaaaggctgttagatctattaaaaaatcagtattttgatgaaatcatcaaaggc
attgaaagttctgctttgagcgagcgagaaaatgttttcaatgaaattgccagaaaaatc
agtgaagcccactcagaattcagtttaaaagaaattgaattgtctttagaaaaagtgaaa
aaaactgagataagacgcatgatcattaaggataaaatccgcccggataagcgcgcgtta
gaggaagtgcgccccattttgatagagagcgatttgctccctatggcgcatagctccatt
ttattcactagggggcaaactcaaagcttagtggtaggggttttaggcacggataatgac
gctcaaacccatgagagtttggagcataaagcccctatcaaagagcgcttcatgtttcat
tataatttccctcctttttgcgtgggcgaagcgagctctattggcgcgacttcaaggcgc
gaattagggcatgggaatttggctaaaagagccttagaaacgagtattaaaaataaagag
caggtgatacgattggtttctgagattttagaaagcaatggttcaagctcaatggcgagc
gtgtgcgcaggctctttagccctttatgcaagcggtgtggaaatttatgatctagtcgct
ggggtggctatgggcatggtgagcgaagggcaagatcacgccattttaagcgatattagc
ggtttagaagacgcagaaggcgatatggattttaagattgccgggaatttagaaggcatt
acggccatgcaaatggataccaaaatgagcggtatccaattagaggttttataccaagct
ttactccaagctaaaaaagcgcgagagcatattttaaaaatcatgcatgaagcgaaagaa
aagattgtgatcaatttttcccatttgcctgcaacggagatttttaatgtcgcgcccgat
aaaattgtagaaattatcggtcaaggggggcgtgtgatcagagagatagtagaaaagttt
gaggttaaaattgatttgaacaaaccgagcggtgaagtgaaaatcatggggaataaagag
cgggttttaaagactaaggaatttattttaaactatttgcattctttggatcaagaattg
gagcaatacgctattgatgaggtgttagaagctcaagtgaagagaatcgtggattttggg
gcgtttttaagcttgcctaaggggggcgaaggcttgttaagaaaacaaaacatggacagg
tgtcaagtggttttaaaagaaggcgatagcatcaggtgtagggtgattagtttcaataag
ggtaaaatcgccttggatttggcgtaa
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