Helicobacter pylori BM012S: U064_0244
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Entry
U064_0244 CDS
T02940
Name
(GenBank) RNA-metabolising Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hez
Helicobacter pylori BM012S
Pathway
hez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U064_0244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hez03019
]
U064_0244
Messenger RNA biogenesis [BR:
hez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
U064_0244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
AHA89180
UniProt:
V5NKT1
LinkDB
All DBs
Position
241879..243963
Genome browser
AA seq
694 aa
AA seq
DB search
MTDNNHYENNENNENSSENSKAHHEARAGAFERFTNRKKRFRENAQKNAESSNHEALSHH
KKERHSSKKPNHHHKAKHAPQKTRNYAQEELDSNKVEGVTEILHVNERGTLGFHKELKKG
VEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFP
KEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGL
IGSKFDEHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHT
GDFKIDHTPVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESAIAPAFDTLFKE
AQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQSFIE
ANEVAKYPDNEILIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNEASV
SAVLNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQ
TAISCGVPEKNIYLMEDGDQVEVGPAFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEV
ASAGVFAATIFVNKNKQALLESSQFSSLGLVGFKDEKPLMKEIQGGLEVLLRSSNAETLN
NPKKLEDHTRNFIRKALFKKFRKYPAIICHVHAT
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgactgataacaaccattatgaaaacaatgaaaacaatgaaaacagcagtgaaaattca
aaagctcatcatgaggcacgagccggagcgtttgagcgattcaccaaccgcaaaaagcgt
tttagagaaaacgcacaaaaaaacgcagagtcttcaaaccatgaagcgctttcgcaccat
aaaaaagagcgccactctagcaaaaaaccaaaccaccaccacaaagctaaacacgccccc
caaaagactagaaattacgcccaagaagagctagatagcaacaaagtagagggcgttacg
gaaattttgcatgtgaatgagagggggactttaggctttcataaggagctcaaaaagggc
gttgaagcgaataacaagatccaggtggagcatttaaacccgcattataagatgaattta
aactctaaagcgagcgttaaaatcacgcctttagggggcttgggcgagattggggggaac
atgatggtcattgaaaccccaaaaagcgcgatcgtgattgatgcgggcatgagcttccct
aaagaggggctatttggcgtggatattttaatcccggatttttcctacttgcaccaaatc
aaggacaaaattgctggcattatcatcacccatgcccatgaagatcacataggggccacg
ccttatttgtttaaagagctgcaattccccctttatggcacgcccttgagtttggggctg
attgggagcaagtttgatgaacatggtttgaaaaaataccgctcgtattttaaaatcgta
gaaaagcgctgccccattagcgtgggcgaatttatcattgaatggatccacatcacgcat
tctatcattgacagcagcgctttagcgatccaaactaaagccggaaccatcattcacacc
ggcgattttaaaatcgatcacaccccggtggataatttgcccacggatttgtatcgttta
gcacactatggcgaaaagggggtgatgcttcttttaagcgattccactaactcccataaa
tccggaactacaccgagtgaaagcgccatagcgccggcttttgataccctttttaaagaa
gcgcaagggagggtgattatgagcacattctctagcaatatccaccgggtgtatcaagcc
atccaatacggcattaaatacaaccgcaagatcgctgtgatcgggcgctctatggaaaaa
aacctagacatcgccagagaattaggctatatccatctgccttatcaatcttttattgaa
gccaatgaagtcgctaaatacccggataatgaaattttaatcgtaacgactggctcacaa
ggcgaaaccatgagcgcgctttatcgcatggcgactgatgagcaccgccatatttctatc
aaacccaacgatttagtcatcatctccgctaaagccattcctggcaatgaagcgagcgtt
tcagcggtattgaattttttaatcaaaaaagaagctaaagtggcttatcaagaatttgac
aatatccatgtgagcgggcatgccgcccaagaagagcaaaagctcatgttaagactcatc
aagcctaagtttttcttacccgtgcatggggaatacaaccatgtcgcgcgccacaagcaa
accgctatttcttgtggggtgcctgaaaaaaatatctatttaatggaagatggcgatcag
gtggaagttggccctgcgttcatcaaaaaagtaggcacgattaaaagcggtaaaagctat
gtggataaccaaagcaatttgagtattgatacaagcatcgtgcaacaaagagaagaagtc
gctagcgctggggtgtttgccgctacgatttttgtgaataaaaacaaacaagcgctttta
gaaagctctcaattttccagtttagggcttgtgggctttaaagatgaaaagcctttgatg
aaagaaattcaagggggcttagaggtgttattaagatccagcaacgccgaaactttgaat
aaccctaaaaaattagaagatcacactcgcaatttcatcagaaaagcgctctttaaaaag
tttagaaaatacccggccatcatttgtcatgtccatgccacttga
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