Helicobacter pylori BM012S: U064_1311
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Entry
U064_1311 CDS
T02940
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hez
Helicobacter pylori BM012S
Pathway
hez03410
Base excision repair
hez03430
Mismatch repair
hez03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
U064_1311
03430 Mismatch repair
U064_1311
03440 Homologous recombination
U064_1311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hez03400
]
U064_1311
DNA repair and recombination proteins [BR:
hez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
U064_1311
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
U064_1311
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
U064_1311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
GLUCM-like_C
Fe-S_biosyn
Motif
Other DBs
NCBI-ProteinID:
AHA90220
UniProt:
V5NNR8
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All DBs
Position
1333812..1335362
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AA seq
516 aa
AA seq
DB search
MKQKLKAQIKERVASIAYNEKGFPSPFLFKDLKKAALKIIEAMQINTEILVVGDYDADGV
ISSAIMAKFFESLNYKHVRIIIPNRFIDGYGISKKFLEKHHAPLIITVDNGINAFEAARF
CKEKNYTLIITDHHCLHHDEIPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFNIAPLINSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNLKRKMIQQQVF
EEAFKHAMVGEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSSN
IDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKVLPFCKTEPPLTLK
LKDIDRELLEIIEAGEPYGQENPEPLFQARNLEVIEEKIIKESHQILRFKDKECVKEAIY
FNAERFLKAGEKVSAIFSVELDECSNEPKMFVKSLL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaagcttaaagctcaaatcaaagagcgggtggcctctatcgcttataatgaa
aaagggtttcctagcccctttttattcaaagacttgaaaaaagccgcgctcaaaatcata
gaagccatgcagataaacacagaaattttagtggtgggcgattatgacgctgacggcgtg
attagctctgctatcatggcaaaattttttgaaagcctgaactataagcatgtccgcatt
ataatccctaatcgcttcattgatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataacgggattaacgcctttgaagccgcgcgattt
tgcaaagaaaaaaattacacccttatcattacggatcaccattgcttacaccatgatgaa
attccagacgcttatgcggtgatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgcggggcgttggtggcgttttatttgtgctatggtatccaccagcttctagga
aaagaaaaaagccattctagtgaattgctatgcttagcgggcgtggcgactattgctgat
atgatgcctttgactttttttaaccgctttttagtttctaaagccttgtattttttgcaa
aaagaatccttaggggcgatggggtttttgcgccaaagagaagtttttagaaaacgctct
ttaaaagcgagcgatatttcttttaacatcgcccccttaatcaactccgcagggcgcatg
caagacgctaaaatggctttagattttttaagcgcgaataattttcaagatggctatttt
ttgtatgaacgcttgaaagcatgcaatttgaagcgtaaaatgatccaacagcaggttttt
gaagaagcttttaagcatgcgatggttggagaaaaaattatcgtcgcttttaaggatgat
tggcatgagggcgtgcttgggattgtggcttcaaaattagtggaagccactcaaaagcca
agcctggtttttacctttaaagaaggggtgtataaagggagcgctcgtagttcttcaaac
attgacttgattgacgctttgaatggggtttcttctttgttgctcggctatggagggcat
aggcaagcttgcggtttgagcgttggaaaaaacaatatcatctcgctctttgaaacttta
gaaaattttgattttaaagtcttacctttttgtaaaacagagccccctttaacgctcaaa
ttaaaagacattgacagagagcttttagagattatagaagcgggcgaaccttatgggcaa
gaaaaccctgaacccctattccaagcaagaaatttagaagtcatagaagaaaaaatcatt
aaagaaagccaccagattttgcgttttaaggataaagaatgcgtcaaagaggctatttat
tttaacgctgagcggtttttgaaagcgggtgaaaaggtgagtgcgatttttagcgtggaa
ttagatgagtgttctaatgagcctaaaatgtttgttaaaagtttgttgtag
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