Halorubrum ezzemoulense: EO776_01105
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Entry
EO776_01105 CDS
T06071
Name
(GenBank) RNB domain-containing ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hezz
Halorubrum ezzemoulense
Pathway
hezz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hezz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EO776_01105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hezz03019
]
EO776_01105
03016 Transfer RNA biogenesis [BR:
hezz03016
]
EO776_01105
Enzymes [BR:
hezz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EO776_01105
Messenger RNA biogenesis [BR:
hezz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EO776_01105
Transfer RNA biogenesis [BR:
hezz03016
]
Prokaryotic type
tRNA degradation factors
EO776_01105
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QAY18738
UniProt:
A0A256JUE4
LinkDB
All DBs
Position
complement(240719..242020)
Genome browser
AA seq
433 aa
AA seq
DB search
MSDDEPKPGSAEDQGPVTITPELADRLAEKREELFEEFEIRDEFPSEVLREAEARTEGVY
EEIEAEIDKREDLRDLTTWTTDPVDAQDFDDAISIKREEGAYRLWVHIADVTHYVTPDTA
MWEEAVERANTVYLPDYTIHMLPPVLAETVCSLVPNEDRLAHTVEMEIDDETLSFEDIDI
YKSVINSDERLTYKECENRLEDPSLPLGEENALAFELADRMHEQRKADGSLVLNPRRDRA
HTIIEESMLKANKAVTHTLMWDRGVEAMYRVHPQPTPDQWNEALKEIQELDGVSIPGEAW
GDDPRKAVNAALEESPERQLNKIQRAVLKVMPRAKYMNDPFGGHHALNFDIYGHFTSPIR
RLSDTINHWIVHENDVPETLVELCDHASDKQKDGETAERLYKQFLQEQGLDPYAVNNRGV
EIVEDSEEAKHTA
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgacgagccgaagcccgggtccgccgaggaccagggccccgtgacgatcacg
ccggagctcgcggaccgactcgcggagaagcgcgaggagctgttcgaggagttcgagatc
cgcgacgagttcccgagcgaggtcctccgcgaggcggaggcgcggaccgagggcgtctac
gaggaaatcgaggccgagatcgacaagcgcgaggacctccgtgacctcaccacgtggacc
acggacccggtcgacgcgcaggacttcgacgacgcgatttcgattaaacgcgaggagggc
gcctaccggctgtgggtccacatcgccgacgtcacccactacgtcaccccggacaccgcg
atgtgggaggaggcggtcgagcgcgccaacaccgtctacctgcccgactacacgatccac
atgcttccgccggtgctggccgagacggtctgctcgctcgtcccgaacgaggaccgactc
gcgcacaccgtcgagatggagatcgacgacgagacgctatccttcgaggacatcgacatc
tacaagtccgtcatcaactccgacgagcgactcacctacaaggagtgcgagaaccggctg
gaggacccctcgctccccctcggcgaggagaacgcgctcgccttcgagctcgccgaccgc
atgcacgagcagcgcaaggcagacggctcgctcgtcttaaatccccggcgcgaccgcgcg
cacaccatcatcgaggagtcgatgctgaaggcgaacaaggcggtgacgcacacgctgatg
tgggaccgcggcgtcgaggcgatgtaccgcgtccacccgcagccgacccccgaccagtgg
aacgaggcgctcaaagagatccaggagctcgacggcgtctccatcccgggcgaggcgtgg
ggcgacgacccccggaaggcggtcaacgccgccttggaggagtcgcccgagcgccagctc
aacaagatccagcgcgccgtgctgaaggtgatgccgcgcgcgaagtacatgaacgacccg
ttcggtggccaccacgcgctcaacttcgacatctacggccacttcacctcgccgatccgc
cgcctgtcggacacgatcaaccactggatcgtccacgagaacgacgtgcccgagaccctc
gtcgaactctgcgaccacgccagcgacaagcaaaaggacggcgagaccgcagagcggctg
tacaagcagttcctccaagaacaggggctcgacccctacgcggtcaacaaccgcggcgtc
gagatcgtcgaggattcagaggaagcgaaacacaccgcctga
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