Humidisolicoccus flavus: U2H20_04825
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Entry
U2H20_04825 CDS
T11070
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hfa Humidisolicoccus flavus
Pathway
hfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U2H20_04825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hfa03019
]
U2H20_04825
Messenger RNA biogenesis [BR:
hfa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
U2H20_04825
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WTM65494
LinkDB
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Position
complement(1014509..1016182)
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AA seq
557 aa
AA seq
DB search
MPSPTPPPPLAPGTLRVIPLGGLGEIGRNMTVYEIDGKLLIVDCGVLFPEEHQPGVDLIL
PDFSPIADRLNDVVGIVLTHGHEDHIGAVPYLLRLKDDLPLIGSKLTLALIEAKLKEHKI
RPYTLEVAEGGIEQLGPFELEFVAVNHSIPDALAVAIRTKAGLVLHTGDFKMDQLPLDDR
ITDLRAFARLGEEGVDLFLPDSTNADVPGFTAPERGIGGVIEGIIGQTRGKVVVASFSSH
VHRVQQVLDAANAHGRKVVLVGRSMVRNMGIASDLGFLRVPDGILIDLKKAANLPDDRVV
YMSTGSQGEPMAVLSRIVGGEHQITVGEDDTVILASSLIPGNENAVFRIINGLMKLGAKV
VHKSNAKVHVSGHASAGELLYCYNILKPKNVIPVHGEHRHLVANAELAIDTGIDRANTFL
GEDGTVWDMTDGNVSVVGQLDLGFVYVDGSSVGEIDEADLKDRRILAEEGFISIFVALEA
QTGKIIVGPEIHARGFAENDRIFDTIKPKIVQALAEAAASGTRDTHAYTQVVRRTVGRWV
GTRIRRRPMIVPVVIEA
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgccttctccaactccaccaccaccgctcgccccgggaacactccgagtgatcccgctc
ggcggtcttggtgaaatcggccgcaacatgacggtctacgagattgacggcaagcttctc
atcgtcgactgcggcgtgctcttcccagaagagcaccagcccggtgtcgacctgattctg
cccgacttctcacccatcgcggaccgtctgaacgacgtggtcggcatcgtgctcacgcac
gggcacgaagaccacatcggagcggtcccgtacctccttcgtctcaaggacgacctccca
ttgatcggctcgaagctgacgctcgcactcatcgaggcgaagctcaaagagcacaagatc
cgcccgtacacgctcgaggtcgcagagggcggcatcgagcagctcggaccgttcgaactc
gagttcgttgcggtcaaccactccattcctgacgcgctcgccgttgccatccgcacgaag
gccggcctcgtgctgcacactggtgacttcaaaatggaccagctgccgctcgacgaccgc
atcaccgaccttcgcgccttcgcgcgtctcggcgaagagggtgtcgatctcttcctgccg
gactccacgaacgcggatgtcccaggcttcactgcgccagaacggggcatcggcggggtc
atcgagggcatcatcggccagacgcgcgggaaggtggttgttgcgagcttctcaagccac
gtgcatcgcgtccagcaggtgctcgacgcggcgaatgcgcacggacgcaaggtcgtcctc
gtgggccgctcgatggtgcgcaacatgggcatcgcttcggatctcggtttcctgcgggtg
ccggacggcatcctcatcgatctgaagaaggccgcgaacctgccggacgaccgagtggtc
tacatgtcgaccggctcccaaggcgaaccgatggctgtgctctcgcgcatcgtcggtggt
gagcaccagatcaccgttggcgaggacgacaccgtcatcctggcttcgagcttgattccg
ggcaacgagaacgcggtcttccgcattatcaacggcctgatgaagctcggggcgaaggtc
gtgcacaagagcaacgcgaaggtgcacgtctccggacacgcatctgcaggcgaactgctc
tactgctacaacatcctcaagccgaagaacgtgatccccgtgcacggtgagcaccgccac
ctcgttgcgaacgcggaactcgcgatcgataccggaatcgaccgggcgaacaccttcctc
ggtgaagacggcaccgtctgggatatgaccgacggcaacgtctccgttgtcgggcagctc
gatctcggctttgtctacgtcgacggctcgagtgttggcgaaatcgatgaggcggatctc
aaggaccgtcgaatccttgctgaagaaggattcatttcaatcttcgtcgcgcttgaagcc
caaacgggaaagatcattgtcggcccagagattcacgctcgtggctttgctgagaacgac
cggatctttgacaccatcaagccgaagatcgtgcaggcgctcgcagaagctgcggcctcg
ggaactcgagacacgcacgcgtacacgcaggtggttcgtcgcacggttggccgttgggtc
ggcactcgtattcgacgtcgcccgatgattgttcctgtggttatcgaagcgtaa
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