Helicobacter felis: HFELIS_03050
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Entry
HFELIS_03050 CDS
T01375
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hfe
Helicobacter felis
Pathway
hfe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hfe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HFELIS_03050 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hfe03019
]
HFELIS_03050 (pnp)
03016 Transfer RNA biogenesis [BR:
hfe03016
]
HFELIS_03050 (pnp)
Enzymes [BR:
hfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HFELIS_03050 (pnp)
Messenger RNA biogenesis [BR:
hfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HFELIS_03050 (pnp)
Transfer RNA biogenesis [BR:
hfe03016
]
Prokaryotic type
tRNA degradation factors
HFELIS_03050 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
PNPase
S1
KH_PARP14_8
S1_2
KH_PARP14_3
Motif
Other DBs
NCBI-ProteinID:
CBY82389
UniProt:
E7A8Q2
LinkDB
All DBs
Position
275208..277247
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AA seq
679 aa
AA seq
DB search
MTIRIHHEEYRLNDIAKQATSALLYRHKGCVILATIMVDKACVEENFLPLSVHFSQRAYA
IGRIPGGFNKREGKLSEFETLTSRAIDRSLRPLFAKDYAHPTQITLLVLSHDQQSDLQVC
ALHAAANALYLANLGIENVAAVRVGRIGGKIVYNPNATELQKSDLNLYVSGTSEALLMVE
MHSQESLPEATLLDLLEKAQKHIRENCLQFQKSFAPHRKAPLAINTPTPPNPTLELLLKQ
HFHQQILEIKTQMAKSEREVDFAHLTTAIAHTLQEKGHSYTFEQIQRSLERYTHQCIREE
ILHTKTRPDGRGFETIRPISIETNLLPHCHGSALFTRGHTQALVVCTVGGPNDAKLQENL
DGLHKERFMFHYNFPPFSVGEATPLSAPGRREIGHGNLAKCALQGSILESDQTIRLVSEI
LESNGSSSMASVCGGSLALYASGIKLKSLIAGVAMGLIIQGEETAILSDISALEDMQGDM
DFKIAGNLEGVVALQMDTKIAGLSLALLSQILQQAKEARGAILECMEQAIEGIMPNTDAL
PTQESFSVPPKKIATIIGPSGKSIKEIIERFEVQIELDKTSGAVCISGGAQNVLDAKEYI
LEMTGFQPYHVEEVLEVEIKKVVDFGIFVRLPRGGDALLHKSHLEKRDLDKDSFMENNTL
ECRIIAIHDDSGKIDVDLA
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgaccattcgtattcatcacgaggagtatcgcctcaatgacattgccaaacaggccact
agcgcgcttctttatcgccataagggttgcgtgatattggctaccattatggtagataag
gcctgtgtagaggaaaattttctacccctaagtgtgcattttagtcaaagagcttatgct
atagggcgcattccgggtgggtttaacaaacgcgaaggtaagttgagcgaatttgaaacc
ctcacttcgcgcgctatcgatcggagtttgcggcctctttttgccaaagactatgcccat
cccacccaaattacattattggtcctcagccatgaccagcaaagcgatctgcaagtttgc
gccctgcatgctgctgctaacgcgctttatttggctaatcttggcattgaaaatgtagct
gcggtgcgtgtgggtagaattggaggaaaaattgtttacaatcctaatgctacagagcta
caaaaaagtgatctcaatctctatgtttctggcacttctgaggcactgctcatggttgaa
atgcattctcaagagagcttaccagaagccacccttttagatttgttagaaaaagcgcaa
aaacatatccgcgaaaactgcttacaatttcaaaaaagctttgcgcctcatagaaaagct
cctcttgctatcaatacccccacccctccaaatcctactttagaactgctcttaaagcaa
catttccaccaacagattttagaaataaaaacacagatggcaaaaagcgagcgagaagtc
gattttgctcatttgaccaccgccatcgcacacactctacaagagaaggggcattcctac
acttttgagcagattcaaaggagcttagagcgttatacgcatcaatgcatccgtgaagag
attttacacaccaagacgcgcccagatgggcgtggttttgaaactatccgccctatttct
attgaaactaatctactaccccattgtcatgggagtgcacttttcacgcgtggccataca
caggccttagttgtttgcaccgtgggagggcccaacgatgccaagttgcaagaaaattta
gatggattgcacaaggagcgttttatgttccactataacttccccccctttagcgtggga
gaagccactcctttaagcgcgccgggccgtagagaaattggacatggtaatctagccaaa
tgcgctttgcagggatcgatcttagagtccgatcaaaccatccgccttgtttcagaaatt
ttagagtccaatggatcaagctcaatggctagcgtgtgtggaggatctttggctctctat
gcaagcgggattaaattgaaatccttaatcgctggggtggctatgggactcattatacaa
ggcgaagaaacagcgatcttgagcgatattagtgctttagaagacatgcaaggggatatg
gatttcaagattgccggaaacctagaaggcgtggtagccttacaaatggacactaaaatc
gcaggactttctctagcacttctatcccaaatcctccaacaggccaaagaagcacgcggg
gcgatcttagagtgcatggagcaagctatcgaaggcatcatgcccaatacagatgctctg
cccacccaagagagtttttctgtgcctcctaagaaaatcgctacgattataggaccttct
ggaaaaagcattaaagaaattattgagcgttttgaggtgcagattgaattagataaaaca
agtggagcagtgtgtatcagtgggggtgctcaaaatgttttagatgctaaggaatacatc
ttagaaatgacaggatttcagccctaccatgtagaagaggtcttagaggtagagataaaa
aaagtggttgattttggaatttttgtgcgtttgccacgaggtggggacgcgctcttgcat
aaaagtcatttagaaaaacgcgatctagataaagattcttttatggaaaataacacttta
gagtgcaggatcattgccattcacgatgatagcggtaaaattgatgtagatttggcttga
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