Helicobacter felis: HFELIS_04780
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Entry
HFELIS_04780 CDS
T01375
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hfe
Helicobacter felis
Pathway
hfe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HFELIS_04780 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hfe03400
]
HFELIS_04780 (mfd)
Enzymes [BR:
hfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HFELIS_04780 (mfd)
DNA repair and recombination proteins [BR:
hfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HFELIS_04780 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
CarD_TRCF_RID
TRCF
Helicase_C
UvrB_inter
ResIII
SNF2-rel_dom
UB2H
Motif
Other DBs
NCBI-ProteinID:
CBY82562
UniProt:
E7A9N6
LinkDB
All DBs
Position
complement(450522..453488)
Genome browser
AA seq
988 aa
AA seq
DB search
MIQASLYQALLKGFKSEVLIVQDGAQARQASQVVRFFAPQKALFVFPELRAHYLDDMRAF
SAEVSTLLSQLRLFYQAKEAKKDCLLITPLSAILHPLPKPFLCQSFSIQALEACPLSELQ
TRLRAYGYEFVDMVELPGEVSVRGDIIDIFTPGSSKPHRLSFFGEECEDIKTFDLATQLS
DPELLECLEIPPALFSLTEQQRTTLLTRLENLQTHSLVPDIASLGWWVLQDFGVYLWEEY
SALLSPEAHQEAQEYASLESIAQLEKILALPQLEHPSGCADLKLPLKNLADFCALHPEHC
ITLLHRAHASLPPLESPVEFILSDCVLHFSTPTKIFISLHSYPKPPKAKPLNFALSELNS
GDFVVHEDYGVGIFQGLVQQNILGSVRDFIALEYQNHDRLFVPVENLHLLERYIAPNTPT
LDKLGKGSFSKLKAKMRAELLGLAEDIISAHAARMLLEGVQITPDPTQLKAFHHARPFKL
TLDQERAIEEVLGDLASGHVMDRLLNGDVGFGKTEVALVAIFALALAKRQSALFVPTTLL
SNQHYASLQARLSPFDITIAKLDRFSRDKARILKDLQEGRIDVVVGTHALLEAKFKDLGL
VVVDEEHKFGVKQKEAIKALSQNVHLLSMSATPIPRTLSMALAQIKDISYLATPPESKPP
SRTFVKEKTPALLKEIILRELRRKGQVFYIYNHIQSMPSVQKSLQDLLPHLRVEILHSKT
PAAQAESLILEFAQGGFELLLCTSIVESGIHLPNANTIIIDHADSFGLADLHQLRGRVGR
GTHEGFCYFLVEDKQDLSPSATKRLLALEKNSSLGSGAHIALHDLEIRGGGNLLGSHQSG
HIKSIGYALYARMLEDALQEKSGTMQARSSVELKLAVSGFLNAELITSDALRLELYRRLS
HCQSSAQVVEIAHEIEDRFGTLDSMSAQFLAIIRIKILANQLGIPKITQHQQHITLHLPN
PVYLQAPSKDDNEVLNTLLGYLERAQVC
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
ttgattcaagctagcctttatcaagcccttttaaaggggtttaaaagcgaggttttgatc
gtgcaagatggcgcgcaggcgcgccaagcctctcaagtggtgcgtttctttgccccccaa
aaagccctctttgttttcccagaacttagggcccactacttggatgacatgcgcgctttt
agtgcggaagtcagcacgcttttaagccaattacgcctcttttaccaagctaaagaggct
aaaaaagattgcttgctcatcacccccttaagcgcgattctccaccccctccccaaaccc
tttttatgccaaagtttcagcatccaagctttagaagcctgccctttatctgagttacag
acacgcctacgcgcctatggctatgaatttgtggatatggtggaattgcccggggaagtg
agcgtacgcggggacattatagatatttttactcccggatcatccaaaccccaccgcttg
agcttttttggagaggaatgcgaggacatcaaaacctttgatctagccacccagttaagc
gacccagaactcttagagtgtttagaaatccctcctgcactctttagtctcaccgagcaa
caacgcaccacccttttaacccgcctagagaatttgcaaacacatagcctagtgcccgat
attgcctctttgggttggtgggtgttgcaagacttcggagtgtatctgtgggaagaatac
agcgcgcttttaagcccagaggcgcaccaagaagcccaagaatacgccagtttagaaagt
attgcgcagttagaaaaaatcctagctttgccccaacttgaacacccttctggatgtgca
gatttaaaactacccctaaaaaatctcgctgatttttgcgctttgcaccctgagcattgc
attacgcttctgcaccgcgcccatgcgagtttgccccctttggagtcgcctgtagagttt
atcctctcggattgtgtgttgcactttagcacccctactaagatttttatctctttgcac
tcctaccccaaaccccccaaagccaaacccctaaactttgctttaagtgagctcaacagc
ggggattttgtggtgcatgaagactatggggtggggatttttcaaggattggtacaacaa
aatattttggggagtgtgcgcgacttcatcgccctagagtatcaaaaccacgatcgcctc
tttgtgccggtggaaaatctgcacttattagagcgttacatcgcccccaacacgcccacg
ctggacaaactaggcaaggggagttttagcaagctcaaagccaaaatgcgcgcggagctt
ctaggattggctgaggatattatcagcgcgcacgccgcgcgtatgttgcttgaaggggtg
caaattacccccgatcccacccaactaaaagctttccaccacgcgcgccccttcaagctc
acgctagatcaagaacgcgccatagaagaggtcttaggcgatctagccagcgggcatgtg
atggatcgcctgctcaatggagatgtgggttttggtaaaactgaagtcgcccttgtggca
atcttcgccctcgccttagcaaaacgccaaagcgcactctttgtgcccacgacactttta
tccaaccagcattatgctagcctgcaagcccgtttaagcccctttgacatcaccattgcc
aaactggatcgctttagtagggataaggcacgcattctaaaagacttgcaagaggggcgt
attgatgtggtggtgggcacgcacgcgcttttagaggcaaagtttaaagatttggggctg
gtggtggtcgatgaggaacataaattcggggtcaaacaaaaggaggcgatcaaggcttta
agccaaaatgtgcatttgctcagtatgtccgctacccctattcctagaaccctaagcatg
gctttagcccaaatcaaggacatcagctacctagccacccctccagagagcaaaccccca
agccgcacctttgtcaaagaaaaaacccctgccttgctcaaggagatcattttaagggaa
ctgcggcgcaaggggcaggtattttacatctataaccatatccaaagcatgccttctgtg
caaaagagcctacaagaccttttaccccatcttagggtggaaattttgcactctaaaacc
cctgccgctcaagcggaaagcttgattttagagtttgcacaagggggctttgaactcttg
ctttgcactagcattgtggaatcggggattcacctgcccaatgccaatacgatcatcatc
gatcacgccgatagttttggattagccgacttgcaccagctaagagggcgtgtagggcgg
ggcacacatgagggattttgctactttttggtagaggacaaacaagatctaagcccaagc
gcgactaaacgcctgcttgccttagagaaaaactctagcttagggagcggggcgcatatt
gctttgcatgacttagaaatccgcggtggggggaatctgctagggagtcatcaaagcggg
catattaaaagtattggctacgcgctgtatgcgcgcatgctcgaagatgccctgcaggaa
aagagtgggactatgcaggcgcgatccagtgtagagcttaaactcgccgtgagcgggttt
ttaaacgcagagttgatcactagcgatgctctgcgcttagagttgtatcggcgtttgtcc
cactgccaaagtagcgcgcaagtggtggagatcgcacacgaaatagaagatcgttttggg
acactggatagcatgagtgcgcagtttttagccatcatacgcattaaaatcttggctaac
caacttggcatccccaagatcacccagcaccaacagcatatcaccctgcacctccctaat
cccgtgtatctgcaagcccccagtaaggacgataacgaggtgctcaacactttgctaggg
tatttagagcgtgctcaggtgtgttaa
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