Helicobacter felis: HFELIS_10290
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Entry
HFELIS_10290 CDS
T01375
Name
(GenBank) 5'-nucleotidase/2',3'-cyclic phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
hfe
Helicobacter felis
Pathway
hfe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hfe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HFELIS_10290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hfe03019
]
HFELIS_10290
Messenger RNA biogenesis [BR:
hfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HFELIS_10290
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
KH_1
HDOD
KhpA-B_KH
UCH
RraB
Motif
Other DBs
NCBI-ProteinID:
CBY83113
UniProt:
E7ACZ5
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All DBs
Position
1017608..1019047
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AA seq
479 aa
AA seq
DB search
MLLYQAQILYQTKEVESQTLLERLQYDFDQKIRAQAQEYQDRLENLKSQEKHHKHYLHTE
QERLEKARQTLEKDQQDLEDQRSAQDQMRHECEALKTQMCATLEQISGYTQEEAKTLLLH
QLEEELLLQKAALVRRYEKEAKKEARKRANFVIANATARFASNFAMENLTSAVSLPDSEF
IGRIIGKEGKNIDSFKRVCGVEVMIDEESKNIVLSCFNLYRREIAKRTLEELIQDGRIQP
ARIETVYQRVEANMEEAILQDAQEVLLELKLDSMHEELKRLIGKMRYRTSYGQNALMHSI
EVATLAGDIATQLGGDSKLARRAGILHDIGKALTYECGGDHVELGAEVCTRHHEHPVVIN
AIYAHHDREEIKSIECAAVCAADALSATRPGARRKDAENFLARMHELERIATKRKGVKKV
FAMDAGREVRVIVCPERVNDSKIALLARDIAKEIETTLQYPGEVVVHVIREKVAKATAR
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgttgctctaccaagcccaaatactctaccaaactaaagaagtcgaatctcaaacactc
ctagaacgcctccaatacgattttgatcaaaaaatccgcgcccaagctcaggaataccaa
gaccgcctagaaaatttaaaatcccaagaaaagcaccacaaacactatctacacacagag
caagaacgcctagagaaggcccgacaaaccctagaaaaagatcagcaagatttagaagat
caaagaagcgcgcaggatcaaatgcgccatgaatgcgaagccctcaaaacccaaatgtgc
gccactttagagcaaatttcaggttatacgcaagaagaagctaagacactgcttttgcac
caactcgaagaagagcttttattgcaaaaggcggccttagtgcgccgttatgaaaaagaa
gccaaaaaggaagcccgaaaaagagctaattttgtgatcgctaacgctacggcgcgtttt
gcaagtaactttgcgatggaaaatctcaccagcgcggtgagcttgcctgatagcgaattt
attgggcgtattatcggcaaagaggggaaaaatatcgacagctttaagcgagtctgtggt
gtggaagtgatgattgatgaagagagcaagaatattgttttaagctgttttaatctctat
cggcgtgagattgcaaagcgcaccttagaggaattgattcaagatggacgcattcagccc
gcgcgcattgaaaccgtataccaacgcgtggaagctaacatggaagaagcgatcttgcaa
gacgctcaagaggtgctattagagctcaaattagattccatgcacgaggaacttaaacgt
ctcattggtaaaatgcgctaccgcaccagttatggacaaaacgccctaatgcactccata
gaggtagccaccttagctggagacatcgccacacaactagggggggattctaaacttgcg
cgccgtgcagggattctccatgacattggtaaagcactcacttatgaatgtgggggggac
catgtggaactgggcgcagaggtgtgcacacgccatcatgaacaccccgttgtgatcaac
gccatctacgcccaccacgatcgcgaggaaattaaaagtatcgaatgtgctgctgtatgc
gctgcggacgcgctctcagccactagacccggggcacggcgcaaagacgcggagaacttt
ttagcacgcatgcatgaacttgagcgcatcgctactaagagaaaaggggttaaaaaagtc
tttgctatggatgctgggcgtgaggtgcgcgtgattgtttgccctgagcgcgtcaatgac
tctaagatcgccctactggctagagacatcgctaaagaaattgaaaccaccctacaatac
cccggcgaagtggtggtgcatgtcatccgtgaaaaagtagctaaagccacagcgcgataa
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