Helicobacter felistomachi: NHP21005_03620
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Entry
NHP21005_03620 CDS
T10843
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha DnaE
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hfi Helicobacter felistomachi
Pathway
hfi03030
DNA replication
hfi03430
Mismatch repair
hfi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NHP21005_03620 (dnaE)
03430 Mismatch repair
NHP21005_03620 (dnaE)
03440 Homologous recombination
NHP21005_03620 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hfi03032
]
NHP21005_03620 (dnaE)
03400 DNA repair and recombination proteins [BR:
hfi03400
]
NHP21005_03620 (dnaE)
Enzymes [BR:
hfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NHP21005_03620 (dnaE)
DNA replication proteins [BR:
hfi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NHP21005_03620 (dnaE)
DNA repair and recombination proteins [BR:
hfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NHP21005_03620 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
zf-C2H2_fungi_2
Motif
Other DBs
NCBI-ProteinID:
BEG56674
LinkDB
All DBs
Position
complement(324413..328021)
Genome browser
AA seq
1202 aa
AA seq
DB search
MQNYTHLHLHTEYSLLDGANKIKILAKKIKELGMTSVSMTDHGNMFGAIDFYTCMKKEGI
KPIIGIETYLHNAEILNDKQSRQRFHLCLYAKDQEGYQNLMYLSSQAFLEGFYYYPRINK
KILRERARGLICSSACLQGEINWHLNDQNPRNKKFGAKGYEEAKRIALEYQDIFGDDFYM
EIMRHGIADQLAIDEQVIRLSKETGIKLIATNDTHYTNKEDASAQEVAMCVAMGKTLNDA
ERLKHSVHEFYIKTPQEMARLFADIPEALEHTQEIADKCHLEIDLKNDTNPPHPPRFKFT
KEYAQNEGLDFEDDKAYFAHKAREGLKKRLEIVEPSQHAKYTERLEYEIKIISDMKFAGY
MLIVWDFIRHARESNIPVGPGRGSAAGSLVAFCLQITDIDPLKYDLLFERFLNPERVSMP
DIDTDFCQRRRGEMLDYMIAKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPYKQADEMA
KLIPNRLGITLQEAFELEPKIQALIERDQLAKQVWDFSLRLENLNRSAGKHAAALVVDSE
RELWYKSPLYTSERTGGIVTQYSMKYLEAIDLIKFDFLGLKTLTVIHDALKIIEKYSHKK
IDFLSVDMDDPKVYATIQEGNTVGIFQIESGMFQTLNKRLRPSSFEDIIAIIALGRPGPM
ESGMVDDFVNRKHGSAPITYMFDALEPILRPTYGTIVYQEQVMQIVQTIAGFSLGEADLI
RRAMGKKDAQIMADNKAKFVQGAIKNNFDSQKAGELFDLIVKFAGYGFNKSHSAAYAMLT
FQTAYLKTHYKHEFMAAMLSSECRHIESVAYYVEEASSMGIKVERPHVNTSDVQFKVEDA
KGEKVIVFGLEAIKGAGEGPLGTLVEIREKHGNFSSLEDLISKIDFSKFSKRILEPLVKS
GSLDGLGYNRRTMLENLDAICDEGRRKDKSNAQMSVGLFANMSSEELEKAHLDLKIYEEF
DANTLLNHEYECMGLYFSGHPLDAFKDAIKSLKNVAKSVDIARMEIGSSAVFIGKVLDVK
RKIGKNSGKPYGEAAIVDFSGRFELMLFEKQLNALDQLDMELPLAFKCKIEEQEEVARLR
LLEIDTFENIKQVKIPKVRYKAQKEDTEDTQPVDIVKDFSDNPSSCVIGHQDEQHIPLSI
VLDTSVSLDLFSRLKEAATSHKGNRALSVVFYEQNKRLRFNTAFKVNTTIKENFKTYQWL
DN
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaactacacccatttacacctacacaccgagtattctttgctcgatggcgcaaac
aagatcaaaatcctagccaagaagatcaaagagctgggcatgaccagtgtgagcatgacc
gaccatggcaatatgtttggcgcgattgacttttacacttgcatgaaaaaagaggggatc
aagcccatcatcggcattgaaacctatctacacaacgccgaaattttaaatgacaaacaa
tccagacaacgcttccatttgtgtttatacgccaaagaccaagagggctaccaaaatctc
atgtatttgagctcccaagcctttttagaggggttttattactatccccgtatcaataaa
aagattttgagagagcgcgctagggggctcatctgctcgagcgcatgcctacaaggcgag
atcaactggcatttaaacgaccaaaacccccgtaataagaaattcggcgcaaagggctat
gaggaggctaaacgcattgccctagaataccaagacattttcggggacgatttttatatg
gagatcatgcgccatggcattgccgaccaactcgccattgacgaacaggtgattagactc
tccaaagaaacgggcattaagctcatcgccacaaatgacacccactacaccaacaaagag
gacgcgagcgcccaagaagtcgccatgtgtgtggcgatgggcaagacccttaatgacgcc
gaacggctcaaacactctgtacatgagttttatatcaagactccccaagagatggcaagg
ctctttgccgacatccccgaagccctagagcacacccaagagatcgccgacaaatgccat
ttagagatcgatctcaaaaacgacaccaaccccccccaccccccccgttttaaattcacc
aaagaatacgcccaaaatgaagggctggactttgaggacgataaagcctactttgcccac
aaagctagagaggggcttaaaaaacgcctagagatcgttgagcccagccaacacgccaaa
tacaccgaacggctagaatacgaaattaaaatcatcagcgacatgaaatttgcgggctac
atgctgattgtgtgggattttatccgccacgccagagagagcaatatccccgtaggtccc
gggcggggcagtgcggcgggcagtttggtcgccttttgtttgcaaatcacggacatcgat
ccgctcaaatacgatctactctttgagcgcttcttaaatcccgagcgggtgagcatgccc
gatattgacaccgacttttgccaaaggcggcggggcgaaatgctcgattatatgatcgcc
aaatacggcaaatacaatgtcgcccaagtgatcaccttcaacaaaatgctggctaagggc
gtgattagagatgtcgcacgggtgctggacatgccctacaaacaagccgatgagatggca
aaattgatccccaatcggctagggatcaccttgcaagaagccttcgagctagagcctaaa
atccaagccttgattgagagggatcagctagctaaacaagtttgggatttttccttgcgt
ctagaaaatttgaatcgctcggcaggtaagcacgccgccgctttggtggtggatagcgaa
agggaactttggtataaatcccccctttacacgagtgagcgcacggggggcattgtcacg
caatactccatgaaatacctagaagccattgatctcatcaagtttgactttttggggtta
aaaacgctcacggtgatccacgatgctctaaagatcattgaaaaatacagccacaaaaag
atcgactttttgagtgtggatatggacgacccaaaagtctatgccacgatccaagagggc
aacacggtggggatcttccaaatcgagtctggcatgttccaaaccttaaacaaacggcta
cgcccttctagttttgaggacatcattgcgatcattgcgctgggtcgccccggccctatg
gagtctggcatggtcgatgactttgtcaatcgcaaacatggcagtgccccgatcacctac
atgtttgacgcactagagcccattttacgccccacttacggcacgatcgtgtatcaagag
caagtcatgcaaatcgtgcaaaccattgcgggcttttctttgggggaggcggatttgatc
cgccgtgcgatgggcaaaaaggacgcacagatcatggcggacaataaagccaaattcgtg
caaggggcgatcaaaaataattttgacagccaaaaggcgggcgagttgtttgacttaatc
gtgaaatttgctggctatggcttcaacaagtcccactccgccgcctatgcgatgctgact
tttcaaaccgcctatttaaaaacccactacaagcacgagttcatggcggcgatgctcagc
agcgagtgccgccacattgagtcggtggcttactatgtagaagaggcaagctctatgggg
atcaaggtggaacgcccccatgtcaatacctccgatgtgcagtttaaggtggaggatgca
aagggcgaaaaggtcattgtttttgggctggaggcgatcaagggggcgggcgagggaccg
ctaggcactttggtggaaatccgtgaaaaacacggcaattttagtagcctagaggatttg
attagcaaaattgatttttctaagttcagcaagcgcattttagagcccttagtcaaatcg
gggagtttagacgggctgggctacaaccgccgcaccatgctggagaatttagacgcgatt
tgtgatgaaggacgtaggaaagacaagagcaacgcccaaatgagtgtggggctgtttgct
aacatgtctagcgaagaattagaaaaggcgcatttggatttaaagatttatgaggaattt
gatgccaacacgcttttaaaccacgaatacgagtgcatggggctttatttttcagggcac
cctttagacgcgtttaaagatgcgatcaagagcctgaaaaatgtggctaagagcgtggat
attgcccgcatggagatcggctcgtcagcggtgtttatcggcaaggtcttagatgtcaaa
cgcaaaataggcaaaaacagcggcaagccctatggcgaggcggcgatcgtggatttctcg
gggcgttttgagttgatgttgtttgaaaaacaactaaacgccctagaccagctagacatg
gaattgcccctcgcttttaagtgtaagattgaggagcaagaggaagttgcccgcttgcgt
cttttagagatcgacacctttgagaacatcaaacaggtcaaaatccccaaagtgcgctac
aaagcccaaaaagaggacacagaggacacacagcccgtagacatcgtcaaggactttagc
gataacccgagttcttgcgtgatcggacaccaagacgaacagcacatccccctatccatt
gtgctcgacaccagcgtgtctttagacttgttttctaggctcaaagaagcggccacaagc
cacaagggcaaccgtgcgctgtccgtggttttctacgagcaaaacaaacgcctacgcttc
aacaccgcctttaaagtcaacaccacgatcaaagagaattttaaaacctaccaatggctg
gataattaa
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