Helicobacter felistomachi: NHP21005_05260
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Entry
NHP21005_05260 CDS
T10843
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hfi Helicobacter felistomachi
Pathway
hfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NHP21005_05260 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hfi03021
]
NHP21005_05260 (rho)
03019 Messenger RNA biogenesis [BR:
hfi03019
]
NHP21005_05260 (rho)
Transcription machinery [BR:
hfi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NHP21005_05260 (rho)
Messenger RNA biogenesis [BR:
hfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NHP21005_05260 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
AAA_28
S1CSD-TOTE-2
Spore_III_AA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BEG56838
LinkDB
All DBs
Position
complement(493420..494721)
Genome browser
AA seq
433 aa
AA seq
DB search
MAHEHHKQKTHTPVSGYRIEELRAQPTERLLEIANELKVENPQEFKRQDLMFEILKNQVS
QGGYILFTGILETAGDGYGFLRGLDGSFSDNQNDTYVSHSQIKRFALRNGDIVTGQVRAP
KDQEKYYALLKIEAVNYLPLDEIRHRPLFDNLTPLFPTEQLKLEYEPTKVTGRMLDLFSP
MGKGQRALIVAPPRTGKTELMKELAHGITYNHPEVELIILLVDERPEEVTDMQRSVNGQV
FSSTFDLPSTNHIRIAELVLERAKRRVEMGKDVVILLDSITRLARAYNAITPSSGKVLSG
GVDANALHKPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVLAR
SISDRRIYPAFDVLKSGTRKDNILLGKDTLTKVWVLRNVMQQMDDVEALNFIYSKMQTTK
DNQEFLKLMQEGS
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatgaacaccataaacaaaagacccacacccctgtgagtggataccgcattgaa
gaattgcgcgctcagcccacagaacggctattagaaatcgctaatgaactcaaagtagaa
aacccccaagagtttaaacgccaagatttgatgtttgaaatccttaaaaatcaggtgtct
caaggcggctacattctctttacagggattttagaaaccgccggggatgggtatgggttt
ttgcgtggtttggatgggagcttttcggataaccaaaacgacacttatgtcagccactcg
caaatcaaacgctttgctctgcgtaatggcgacattgtaacggggcaagtgcgcgcgccc
aaagatcaagaaaaatattacgccctgctaaagatcgaggcggtgaattacctgccccta
gatgaaatccgccaccgcccactctttgataatctcacccccctatttcctacagaacag
ctaaagttagagtatgagccgactaaagtgacagggcgcatgctcgacttgtttagcccg
atgggtaaggggcaaagggctttgattgtcgccccaccgcgcacaggtaaaacggagttg
atgaaagagttggcgcatgggatcacctacaaccaccccgaagtggagctcatcatttta
ttagtcgatgagcgccccgaagaggtgacagacatgcaaagaagcgtgaatgggcaagtt
tttagctccaccttcgatttgccttctacaaaccacatacgcattgctgagctagtccta
gagagggcaaagaggcgggtagaaatgggtaaggatgtggtgattttgctagattcgatc
acccgtttagccagagcttacaatgcgatcacgccctcaagcgggaaagtgctaagcggg
ggtgtagatgccaatgccctgcataagcccaagcgcttttttggggcagctagaaacatt
gaagagggagggagtttgacgatcatcgccaccgccttgatcgaaacgggctcgcgcatg
gatgaggtgatctttgaagagtttaaaggcacgggcaatagtgaaattgtcttagcccgc
agtatctccgatcggcgcatttaccccgcctttgatgtcttaaaatcaggcacccgtaaa
gacaatatcttgctaggcaaggacaccttaacgaaagtgtgggtgctaagaaatgtgatg
cagcaaatggacgatgtggaggcgttaaacttcatttactccaaaatgcagaccaccaag
gacaaccaagagtttttaaaactcatgcaagagggttcttga
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