Helicobacter felistomachi: NHP21005_07480
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Entry
NHP21005_07480 CDS
T10843
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta/beta' RpoB
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hfi Helicobacter felistomachi
Pathway
hfi03020
RNA polymerase
Brite
Enzymes [BR:
hfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NHP21005_07480 (rpoB)
Transcription machinery [BR:
hfi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NHP21005_07480 (rpoB)
DNA repair and recombination proteins [BR:
hfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NHP21005_07480 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
BEG57060
LinkDB
All DBs
Position
687770..696412
Genome browser
AA seq
2880 aa
AA seq
DB search
MPQDLPVPNLLLLQKDSYEAFLYAKEGRESGIERVFKSVFPIHDSQNRITLEYGGCEYGE
PKYTVREAMERGITYSAYLKIKIRLILWEKDPKTGERLGPKDIKEQSIFIREIPLMTDRT
SFIINGVERVVVNQLHRSPGVIFKEEKSTTSANKLIYTGQIIPDRGSWLYFEYDVKDILH
VRINKRRKVSATILFRALGYSKQDIIRIFYPLLKVRYKPDEQGEHYFIPFESIATDSRLD
FDLKDEKGRLLLAASRKLTAKKAKEIKESGVEWVEYPTKILLSRYLAEPILDKNQETLLD
ALTLLEQPKLDKIKEAGVKEFVIANDLALGHDASIIKSFTSDAESLRSESQKLLKQSEKV
EDENALAAIRIYKVMRPGDPVTAEVAQRYVQQLFFDPERYDLTMVGRMKMNHKLHLKVPN
YVTVLTHEDIIETVRYLIKIKNGQGHIDDRDHLGNRRIRAVGELLANELHEGLMKMQKTI
KDKLTTMNTNLDALMPHDLVNSKMITSTILEFFMSGQLSQFMDQTNPLSEVTHKRRLSAL
GEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNELGFIEAPYKK
VVEGQVGEQVEYLTAIQEEGHVIAPASTALDAQGYIQEDLVETRVGGEIVLNEKSKVTLM
DLSSRILVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSEAPIVGTGIESVIARDSW
GSVKAERRGVVDEVDSENIYIVEKDPEKGPHITSYLLQKNLRTNQNTCFNQVPIVKVGDV
IEEGQIIADGPSMDQGELALGKNIRVAFMPWNGYNFEDAIVVSEKITKDDVFTSVHIYEK
EIEARELKHGSEEFTSDIPDVKEEEIAHLDNGGIVKIGTYVSAGMILVGKVSPKGEMKST
PEERLLRAIFGDKAGHVVNKSLYCPPSLEGVVIGVKIFTKKGCERDARATSAYEEEKWIL
DDRHDKHFKMLDKEEALQISAIFSQEPLEEEVILNDVTYPKGAKIPREVVENTNRFGLIS
LSKKFSKEVQNRFEQIKNNILEQKKLLGQSHEKKLSILEKDDILPNGVIKQVKIYIATKR
KLKVGDKMAGRHGNKGIVSNIVPIADMPYTADGEPIDIVLNPLGVPSRMNIGQILEVHLG
LVGVQLGKQIQALLATHTADMLAKLRAKMLEIAHVVNVHNHDLAHMLEQCSDEQLLEYAR
DWQHGVKFAIPVFEGISQEQFMELFKLAQIDLDGKTELYDGRTGEKMKERVNVGYMYMLK
LHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLKEMLTVK
SDDIKGRENAYRAIARGEHVGESEIPETFYVLTKELQSLALDVNIFNEEVDEYGAPKPIV
IKEDDRPKDFSSFQLTLASPDKIREWSYGEVKKPETINYRTLKPERDGLFCMKIFGPTKD
YECLCGKYKKPRYKTIGTCEKCGVAITSSKVRSFRMGHIELATPVAHIWYVNSLPSRIGT
LLGIKMKDLERVLYYEAYIVKDPGQACYDLEGSKPVLKYDILNEEQFQSIQRHYSDQDFN
AQMGGEVIKELLEELDLVGLLESLKEEVKDTNSDAKKKKLVKRLKVVESFINSGNRPEWM
MLTALPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEIIVRNEKR
MLQEAVDALFDNGRNANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVV
GPNLNMDQCGLPKNMALELFKPHLLSKLEEKGFATTLKQAKRMIEQKTNEVWECLEEIVE
GYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAI
TECKVLMLSSMNILLPASGKAVAVPSQDMVLGLYYLSLEKSGVLGEHKLFSSVAEVLMAV
DAKELDVHAKVRVLQERHILQTTAGRLVIKSILPDFVPAHLWNKVLKKKDIGALVDYVYK
ESGIGQTAKFLDNLKNLGFRYATKAGISISMEDIITPANKVSMVEAAKERVKAIQAQFEG
GHLSEQERYNKIIDIWTEVNDAMSQEMMAAIASDKQGFNSIYMMADSGARGSAAQIRQLS
AMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTATAGYLTRKLI
DVAQNVKVVQEDCGTHEGIEITDITVGSELIEPLEERIFGRVLVEDIIDPLTNEVLLNAD
TMVDEEKAKRIVEAGIKSVTIRTPVTCKAQKGVCAKCYGLNLGEGKMVKPGEAVGVVAAQ
SIGEPGTQLTLRTFHVGGTASRSQEEREIVASNEGFVRFFNVKTYQNKEGKNIIVNRRNA
AILVVEPKIKAPFDGVLKVDSAHEEVVLSVVGETQEAKFVLRKSDVAKPNELAGVSGKIE
GKIYLPYGSGHVVHEGGSIADIIKDGWNVPNRIPYASEIAVQDNDPITQEITAKEKGVVK
FYHLVGDHLERARGVKAGDIVEEKGLFAVVADENDQEAIRHYIARNSLVQVDDNSPTEAN
TLLVKPSHDAKNTIASWDPYNTPIIADMGGVVRFIDIVAGVSVTETEDENTGVRSLVVNE
YIPTGFKPSLMIEAQGQEPIYYPLEPKTSIAIAEGAQVEVADVLAKIPKATAKSKDITGG
LPRVSDIFEARKSKPKDLAILSEIDGQVSFEKPVRNKERVCITAADGRKAEYFIDKGKQI
LVHPNEFVHAGEAITDGAVSSHDILRISGEKELHKYIVSEVQQVYRRQGVNIADKHIEII
VSQMLRQVRILDSGNTKFIEGDLVSKKHFKEENQRVLQSKGEPAIAEPVLLGITRAAIGS
DSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGLYKDKKVGVKTDKH
NT seq
8643 nt
NT seq
+upstream
nt +downstream
nt
atgccccaagacttacccgtccccaatctcttgctcttgcaaaaagacagctatgaggcg
tttttatacgccaaagagggcagagagagcgggattgagcgggtgtttaaatcggtcttt
cccatccacgacagccaaaaccgcatcactttagaatacgggggctgtgaatacggcgag
cctaaatacaccgtgcgcgaggcgatggagcggggcatcacttattcagcctatcttaaa
atcaaaatccgcctgatcctttgggagaaagaccccaaaacgggcgaaagactgggcccc
aaagacattaaagaacaaagcatttttatccgtgagatccctttaatgaccgatcgcacc
tcttttatcatcaatggcgtagagcgtgtggtggttaaccagctacacagaagccctggg
gtgatctttaaagaagaaaaatccaccaccagcgccaataaactgatctacaccggccaa
atcattcccgatcgcggctcgtggctgtactttgaatacgatgtgaaagacattttacat
gtgcgcatcaacaaacgccgtaaagtgtccgccacaatcctgtttagagccctaggttac
agcaaacaagacattatccgtattttctatcctcttttaaaagtgcgctacaaacccgat
gagcaaggggagcactacttcatcccctttgagagcatcgccacagatagccgcttagat
tttgatctgaaagatgaaaaagggcggttgctcttagccgccagccgcaaactcactgcc
aaaaaagccaaagaaattaaagagagcggggtagagtgggtggagtaccccacgaaaatt
ttgctgagccgctacctagccgaaccgattttagataaaaatcaagaaacccttttagac
gctttaaccctcttagaacaacccaaactcgacaagatcaaggaagcgggcgtcaaagaa
tttgtcatcgccaacgacctagccctaggccatgacgcttcgatcatcaaatccttcacc
tccgatgccgagtcgctaagaagcgaatcgcaaaagctgttgaaacaaagcgaaaaggtg
gaggatgaaaacgccctagcggcgattcgcatttataaagtcatgcgcccgggcgatccg
gtgacggctgaagtcgcccagcgctacgtccaacaactcttttttgaccccgagcgctac
gacttaacgatggtcgggcgcatgaagatgaaccacaagctgcatttaaaagtgcctaac
tatgttaccgtgctcacccacgaggacatcattgaaaccgtacgctacctcatcaagatc
aaaaacgggcaggggcacatcgacgatcgcgaccacttaggtaaccgccgcatccgtgcc
gtgggcgagttgttggcaaacgaactgcacgagggtctgatgaaaatgcaaaagaccatc
aaagacaagctcaccaccatgaacaccaacttggacgcgctcatgccccacgacctggtc
aattctaaaatgatcaccagcaccattttagagtttttcatgagcgggcaactctcccag
ttcatggatcaaaccaaccccttatccgaggtgacgcacaaacgccgtctttcagctttg
ggtgagggcggacttgttaaggaccgcgtgggttttgaagcgcgggatgtgcaccccaca
cactacgggcgcatttgccccattgaaaccccagaggggcaaaacattgggctcatcaac
actctatccaccttcacgcgggtcaatgaactcggcttcattgaagccccttataaaaag
gtggttgaggggcaggtgggcgagcaagtggaatacctcaccgccattcaagaagaaggc
catgtcattgcccccgccagcaccgcgctagacgctcaaggctacatccaagaggacctt
gtggaaacgcgggtgggcggggaaattgtgctcaatgaaaagagcaaagtgactttaatg
gatttgagctcgcgcattttagtgggcgtggcggcatccttgatccccttcttagagcat
gacgatgccaaccgcgccttgatggggacaaacatgcaacgccaggccgtgcccttgttg
cgctccgaagcacccattgtgggcacgggcattgaaagcgtgatcgcgcgcgattcgtgg
gggagcgtgaaagcggagcgtaggggcgtggtggatgaagtggattcggagaacatctac
atcgtggaaaaagaccctgagaagggcccccacatcacttcttatttgctgcaaaagaat
ttacgcaccaaccaaaacacctgctttaaccaagtgcccatcgtcaaagtgggcgatgtc
attgaagaggggcagatcatcgctgatggccctagcatggatcaaggcgaattggctcta
ggtaaaaacatccgtgtggcgttcatgccctggaatggctacaactttgaagacgcgatt
gtggtgagtgagaagatcaccaaagacgatgtgttcacttccgtgcacatttacgaaaag
gagatcgaggctagagagctcaagcacgggagcgaagagttcacctccgacatccccgat
gtcaaagaggaagagatcgcccacctagataatggggggattgtcaaaatcgggacctat
gtgagcgcggggatgattttagtcggcaaggtctcacccaagggcgaaatgaaaagcacg
cctgaagagcgcttgctgcgcgccatctttggggacaaagccgggcatgtggtgaacaag
tcgctctattgccccccctctttagagggcgtggtgatcggggtgaagatcttcaccaaa
aaaggctgcgaaagggatgcgcgcgccacaagtgcctatgaagaagaaaaatggatctta
gacgatcgccacgacaagcattttaaaatgctggataaagaggaagccctacaaatcagt
gcgatcttctcccaagagcctttagaggaagaggtgatcttaaacgatgtcacctacccc
aaaggtgcaaaaatccctagagaggtcgtggaaaacaccaaccgctttgggctcatttct
ttgtctaaaaaattcagcaaagaagtccaaaaccgctttgagcaaatcaaaaacaacatt
ttagaacaaaagaaacttttaggccaaagccacgagaaaaaactctccattttggaaaaa
gacgacattttgcccaatggagtcatcaagcaggtgaaaatctacatcgccaccaagcgc
aagctcaaagtgggggataaaatggccggacggcacggcaacaagggcattgtgtctaac
atcgtgcccatcgccgacatgccctacaccgccgatggcgagcccatcgacattgtgcta
aacccccttggcgtgcctagccgcatgaacatcgggcagattttagaagtgcacttaggc
ttagtgggagtccagctgggcaaacaaatccaagccctgcttgccacgcacacggcggac
atgctcgcaaaactgcgggctaaaatgctagagatcgcccatgtggtcaatgtccataac
cacgacctagcccacatgctcgagcagtgcagcgatgaacagcttttagaatacgcccgc
gattggcaacatggcgtgaaatttgcgatccccgtctttgagggcatcagtcaagagcag
ttcatggagctctttaagctggcacaaatcgacctcgatggcaaaaccgagctttatgac
gggcgcacgggcgagaagatgaaagagcgggtcaatgtgggctacatgtacatgctcaaa
ctccaccacctcgtggatgaaaaagtgcacgccagaagcacggggccttactctctcgtc
acccaccaacccgtgggcgggaaggcgctctttggcggacaacgctttggagaaatggag
gtgtgggctttggaggcttacggcgcggcacacacacttaaagaaatgctgaccgtgaaa
tccgatgacattaagggcagagagaacgcctatagagccatcgctagaggcgagcatgtg
ggggagagcgaaatccctgaaactttttatgttttgactaaagaattgcaatcgttggct
ctagatgtcaatatttttaatgaagaagtggatgaatatggagcgcccaaacccattgtc
attaaggaggacgatcgccccaaagactttagctctttccagctcacccttgcgagcccg
gataaaatccgcgagtggagctatggggaggtgaaaaagcccgagaccatcaactaccgc
accttaaaacccgagcgcgatgggctcttttgtatgaaaatctttggaccgaccaaagac
tacgaatgcctgtgtggcaagtacaaaaaaccgcgctacaaaacgatcggcacttgcgaa
aaatgcggcgtggcgatcaccagctctaaagtgcgctcttttagaatggggcacattgag
ctagccacgcccgtggcgcacatttggtatgtcaattccctgcctagccgcatcggcacg
cttttaggcatcaaaatgaaagacttagagcgcgtgctctactacgaagcctacatcgtc
aaagaccccgggcaagcgtgctacgatttagagggcagcaaacccgtgctcaaatacgac
atcttaaacgaggagcagtttcagagcatccaacgccactactccgatcaggattttaac
gcccaaatgggaggcgaggtgattaaagagctcttagaagagttagatttagtgggcttg
ctcgaatcgctgaaagaagaggtcaaagacaccaactcggatgccaagaaaaagaaatta
gtcaaacggctcaaagtcgtggaaagtttcatcaattcgggcaaccgccccgagtggatg
atgctcaccgccctgcccgtcctgcccccagatttacgccctttagtggctctagatggc
ggcaagtttgccgtgagcgatgtcaatgaactttatcgacgggtgatcaaccgcaaccaa
cgcttaaaacgcttgatggagctgggcgcgcctgagatcatcgtgcgcaatgaaaagcgc
atgttgcaagaggcggtggatgcgctgtttgacaatgggcgcaacgccaatgccgtcaaa
ggcgcgaacaaacgccccttaaagtcactctcggaaatcatcaagggcaaacaaggccgc
tttagacaaaacttgctaggcaaacgcgtggacttctcaggccgcagcgtgattgtggtg
gggcctaatcttaacatggaccaatgcgggctgcctaaaaacatggcgctcgaactcttt
aaaccccatttgctctctaagttggaagaaaagggctttgccaccacgctcaaacaagcc
aagcgcatgatcgagcaaaaaaccaacgaggtttgggagtgcttggaggaaatcgtggag
ggctatcccgtgctcttaaaccgcgcccccacgctgcataaacaatcgattcaagccttc
caccccaagctcatcgatggcaaggcgattcaactccacccgctggtgtgctcggccttc
aacgccgactttgacggcgatcaaatggccgtgcatgtgcctttaagccaagaggcgatc
acggagtgcaaggtcttgatgttaagctcgatgaatatcttgttgcctgccagcggtaag
gcggtggccgtgcctagccaggacatggtgctcgggctttactacctgtccttagaaaaa
agcggcgtgctgggcgagcataaactcttttctagcgtggcggaggtcttgatggccgtg
gatgccaaagaattagacgtgcacgccaaagtgcgggttttgcaagaacggcatatcctg
caaaccaccgccggccggctggtgatcaaatccattttgcccgactttgtgcccgcccac
ttgtggaacaaagtgttgaagaaaaaggacatcggggcgttggtggattatgtctacaaa
gagagcggcattggccaaacggccaaattcctagacaatctcaaaaacctaggctttaga
tacgccactaaagcgggcatctccatctctatggaggacatcatcacgccggccaataaa
gtcagcatggtggaggcggccaaagagcgggtgaaggcgattcaagcccagtttgagggc
gggcacttgagcgaacaagagcgctacaataaaatcatcgacatttggaccgaggtcaat
gacgcgatgagtcaagagatgatggccgccattgccagcgacaagcagggcttcaactcc
atttatatgatggccgatagcggcgcgcgtggttcagccgcccagattcgccaactctcg
gcgatgcgcggcttgatgaccaaacctgatggcagcatcattgaaacgcccatcatctct
aactttaaagagggcttgaatgtgctggagtacttcaactccacgcacggggcgcgcaaa
gggttagccgacaccgcgctaaaaaccgccaccgccggctatctcacccgcaaactcatc
gatgtcgcccaaaatgtcaaggtggtgcaagaggattgcggcacgcacgaaggcatcgag
atcaccgacatcacggtgggcagcgagctcatcgaacctttagaagagcgcatttttggc
cgggttttagtggaggacatcatcgatccgctcaccaacgaagtcttgttaaacgcagac
accatggtggatgaagaaaaggccaagcgcattgtggaggcgggcattaaatccgtcacg
attcgcacccccgtcacttgtaaggcccaaaaaggcgtgtgcgctaaatgctacggcttg
aatttgggcgagggcaaaatggttaaacccggcgaggcggtgggcgtggtggcggcgcag
tccatcggcgagccgggcacgcaattaaccctaagaaccttccacgtgggcggcacggcc
tcacgaagccaagaagagcgcgagattgtcgccagcaatgagggctttgtgcgctttttc
aatgtcaaaacctaccaaaacaaagagggcaagaacatcatcgtcaaccgccgcaacgcc
gcgattctcgtggtggagcctaaaatcaaagccccctttgatggcgtgctgaaggtggat
agtgcccatgaagaggtggttttaagcgtggtgggagaaacccaagaggcaaagtttgtc
ttgcgtaaaagcgatgtggctaaacctaatgagctggccggggtgagcgggaagatcgag
ggcaaaatctatctgccctatggcagtgggcatgtggtgcacgaggggggcagcatcgcc
gacatcatcaaagacggctggaatgtgccaaatcgcatcccttacgcttctgagatcgcc
gtgcaagacaacgacccgatcacccaagagatcaccgctaaagaaaagggcgtggtgaag
ttctaccaccttgtgggcgatcacttagagcgtgctaggggcgttaaagcgggcgacatt
gtggaggaaaaggggctatttgcggtggtcgctgatgaaaacgaccaagaggccatccgc
cactacatcgcccgcaactctttggtgcaagtggacgacaacagccccacagaagccaac
acccttttagtcaagcccagccatgacgcgaaaaacaccatcgccagctgggacccctac
aacacgcccatcatcgccgacatgggcggcgtggtgcgctttatagacattgtggcgggg
gtgagcgtgactgaaactgaagatgaaaacaccggcgtgcgctccttggtcgtcaacgag
tacatccccacgggctttaaacccagcctgatgatcgaagcacagggccaagagcccatt
tactaccccctagagcccaaaacctcgatcgccattgccgagggcgcgcaggtggaggtc
gcggatgtgctggcgaaaatccccaaagccaccgcgaaatctaaggacatcacgggcggc
ttgccccgcgtctccgacatctttgaagcccgcaagagcaagcctaaagatttagcgatt
ttaagcgaaattgacgggcaggtaagctttgaaaagcccgtgcgcaataaagagcgcgtg
tgtatcacggctgccgatgggcgcaaagcggagtacttcatcgacaagggcaaacagatt
ttggtgcaccctaatgaattcgtgcacgcgggcgaggcgatcaccgatggcgcggtgagc
agccacgacattttacgcatcagcggagaaaaggaattacacaagtacatcgtgagcgaa
gtgcagcaagtttaccgccgccagggggtcaacatcgccgacaagcacatcgagatcatc
gtgtcgcaaatgctgcgccaagtgcggattttagacagcgggaacaccaagttcattgag
ggcgatttggtgagcaaaaagcactttaaagaggaaaaccagcgggtgttgcaatctaaa
ggcgagccggccattgccgagcctgtgcttttaggcatcacccgcgcggcgatcggcagc
gatagcatcatctctgccgccagcttccaagagaccacaaaagtgctcacagaagccagc
attgcgatgaaaaaggacttcttagaagacttaaaagaaaatgtggtgctggggcgcatg
atccctgtgggcaccgggctgtataaagacaaaaaagtcggggtgaagacggacaaacac
tga
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integrated database retrieval system
