Hyphococcus flavus: PUV54_01150
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Entry
PUV54_01150 CDS
T08821
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hfl
Hyphococcus flavus
Pathway
hfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PUV54_01150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hfl03019
]
PUV54_01150
Messenger RNA biogenesis [BR:
hfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PUV54_01150
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B_2
Lactamase_B
RNase_J_C
DPM3
Motif
Other DBs
NCBI-ProteinID:
WDI31792
UniProt:
A0AAE9ZER6
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Position
complement(211484..213148)
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AA seq
554 aa
AA seq
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MSRKELVFLPLGGSGEIGMNMNLYGFGTPANRQWVMIDCGVMFGDLSTPGVDLICPDPTY
ILEEKEALHGLLLTHGHEDHIGAVALLAPKLGCPIYATPFTAALVARKLEEYEETNYELN
VIDMNARFKLGPFDIEYVTLTHSIPEPSGVILRTDLGTVLHTGDWKIDASPALGPVTDSG
TIKKLGDDGLLAMVCDSTNVLSSGESGSESAVKKSLTKLIAEQLGRVAVTTFASNVSRVV
SICEAAAAADRSVCLLGRSMLRIVDAARETGLLPEGLSFVEPKDAGHLPREHVLYLCTGS
QGEPRAALSRIARNDHRDLTLSEGDTVIFSSKIIPGNDREIYNLQNDLVELGVKIITEKD
EFVHVSGHPCREELRSMYEWARPEIAIPVHGEARHLEEHAEFALELGAEKSFAPRNGDLI
RIAPNGPERIDEVPAGRMYLDGDVLLPDGAAAMRERRKLSYAGALFVSLAFDKKGELADV
VAADGAGIVWADDAPDAAAELADEIDEAVNDLPRTKRKDDEAVALAVKRAARVYFDEVWG
KRPLIVTHILRLGS
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgtaaggaacttgtcttcctgccgcttggcggttcgggcgagatcggcatgaac
atgaacctttatgggttcggcacgccggcgaacaggcaatgggtgatgatcgattgcggc
gtcatgtttggcgacctgtcaacacccggagttgatctgatttgtccggatccgacctat
attctcgaagaaaaagaggcgctgcatgggttgttgctgacgcacggtcatgaggaccat
atcggcgctgtcgcgttgcttgccccgaagcttggctgtccgatttacgcaacgcctttt
acggcggcattggtggcgcgcaagctcgaagaatatgaagaaaccaattacgaactgaat
gttatagatatgaacgcgcggttcaagctggggccgtttgatattgaatatgtcacgctc
acgcattcaatcccggaaccaagcggcgtcattttgcgaactgaccttggaaccgtattg
catactggcgactggaaaattgacgcttcgcccgcattgggccctgtaactgacagcggg
acaatcaaaaaactgggcgatgacggacttctcgccatggtctgcgattccaccaatgtc
ttgtcatcgggcgagtccggttcggaatcggcggtgaaaaaatcactcaccaaattgatc
gcagagcagctgggcagggtggccgtcacgaccttcgcttcgaatgtctcccgtgttgtt
tccatctgcgaagcggctgcggcggcagatcgcagcgtatgtcttctcgggcgttccatg
ctgcgcattgtcgatgccgctcgcgagacagggttgctgcctgaagggttgtcctttgtt
gagccgaaggatgcagggcacctgccgcgcgaacatgtgctttacttgtgcacaggctcg
cagggcgaaccgcgtgcggcgctgtcacgcatcgccagaaacgatcatcgcgatcttacc
ttgtccgaaggggatacggtgatcttttcgtcgaagatcatacccggaaacgatcgagag
atttacaatctgcagaacgatctcgttgaacttggcgtcaaaatcatcaccgagaaagat
gagtttgtgcacgtctccggtcatccttgtcgcgaagaattacgctcaatgtacgaatgg
gcgcggccggaaatagccatccccgttcatggagaggcgcggcatctcgaagaacatgcg
gaatttgcgctggagctaggcgctgaaaaatctttcgcaccccgtaatggcgatcttatc
cgcatcgcgccaaacggtcctgaacgcattgatgaggttcccgcgggccgtatgtatcta
gatggagacgtgttgttgcctgacggcgccgccgccatgcgcgagcggcgcaagctttcc
tatgcaggcgcgcttttcgtgtctctggcgtttgataaaaaaggagagcttgctgatgtg
gttgccgctgacggggccggcattgtctgggcggatgacgcgcccgatgcggcagcggaa
ctcgctgatgagatcgatgaggcggttaacgatctgccgcgaacgaagcgtaaggacgac
gaagccgttgcattggccgtcaaaagggcggcgcgtgtctattttgatgaagtctggggt
aagaggccgctgatcgtcacgcacatattgaggctcggatcatga
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