Hyphococcus flavus: PUV54_12985
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Entry
PUV54_12985 CDS
T08821
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hfl
Hyphococcus flavus
Pathway
hfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PUV54_12985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hfl03019
]
PUV54_12985
03009 Ribosome biogenesis [BR:
hfl03009
]
PUV54_12985
Enzymes [BR:
hfl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PUV54_12985
Messenger RNA biogenesis [BR:
hfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PUV54_12985
Ribosome biogenesis [BR:
hfl03009
]
Prokaryotic type
rRNA processing factors
PUV54_12985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
GxGYxYP_N
KH_1
Motif
Other DBs
NCBI-ProteinID:
WDI30869
UniProt:
A0AAF0CEZ7
LinkDB
All DBs
Position
complement(2715073..2717901)
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AA seq
942 aa
AA seq
DB search
MTKKMLIDAAHPEEVRVAVLDNGKVEDFDFESAARKPLRGNIYLARVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVSDRRALQDAEAEVAELAAELELAQRGDEDEDDHHDDH
HHDEDDDAPPRKKAKRSSRKETAANEDGDAGDDLSDEDGKRVSAKAEITDEDDDIDSDVE
DASSEEEEEEEQDGEEDADADTKPAKKTVGDSQDAEDAPAEPFKAAEENDGDADGTSESD
FAEDISEDDEAEMLTAEADSDSSEAEASEQEAGDEQENDSAEEKKAKSAAKKRQALFERY
KDAKRRRSQLLRNYKIQEVIKRRQILLIQVVKEERGNKGAALTTYMSLAGRYCVLMPNTA
RGGGISRKIPHSADRRRLRRAVDSLDVPQGMGLIIRTAGAKRTKTEIKRDYDYLLRLWET
IRTLTLKSIAPCLIYEEASLIKRAIRDLYDKDISEVQVEGENGYREAKDFMKMLMPSHAK
FVQPYKDQAPIFLKHGVEQQLDGMYQPTVRLKSGGYIVIHQTEALVAIDVNSGRATRERN
IEQTALKTNIEAAYEAARQFRLRDLAGLIVLDFIDMEEPRNNRKVEKALKDAIKSDRARI
QLGRISNFGLLEMSRQRRRSGIVDGTTQSCPTCVGAGVIRSAEMAALRILRAIEGDAVSG
KAGIIATHASIDVAVYILNQHREWLRRIEQEHGVTIEIVPDREKAGDDYTLEKSGTPKPR
PEASAVVTADQKEMIDAEDISEPDVDNESDEQGGDRKKRRRRRRRKDASPRDDRSEADSE
DQDSDNNEDKKESRTSEGDDDDGARKRRRRGRRGGRRNRRNRSEETNTESEAAKESSSDD
GKKSDDEPDATAPSDAGDTSTASDEPTTEIKSNSDATEAAKPVKTNGSSHEHAAESPDDA
KAPEPQPEQAPEAKQPVDLAEAPQPSPPKPKKRGWWSRNSNA
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaagatgctgatcgacgcggcccaccccgaagaggtgcgcgtcgcggtgctc
gacaatgggaaagtcgaggatttcgacttcgaatcggcggcgcgaaagccgcttagaggc
aatatttacctggcgcgggtcacccgcgttgaaccttcactacaggcggccttcgtcgat
tatggcggcaatcgccacggctttctcgccttcagtgaaattcacccggactactaccag
atccccgtttcggaccgtcgcgccttgcaggatgctgaggccgaagtcgccgaactggcc
gccgagctggaactcgcacagcgcggcgacgaagatgaggacgatcatcacgacgaccat
caccacgatgaggacgatgacgcaccgcctcgcaaaaaagccaaacgaagcagccgtaaa
gaaaccgctgctaacgaggacggcgatgctggcgatgacctttccgatgaagacggcaaa
cgcgtttccgctaaagccgagataaccgacgaagacgacgacatcgacagcgatgtggaa
gacgcctcttccgaagaagaggaagaagaagaacaagacggcgaagaagacgctgacgcc
gatacgaagcccgccaaaaaaaccgtcggcgattcgcaagacgctgaagacgcccctgct
gaacctttcaaagccgccgaagaaaatgacggcgacgccgatggaacgtcggaaagcgat
tttgcagaagacatttctgaagacgatgaagcagagatgttgaccgccgaggctgattct
gacagcagcgaagcagaggcgtccgaacaggaggccggcgacgagcaagaaaacgatagc
gctgaagaaaagaaagcaaagtcagctgcaaagaaacgtcaggcgctgtttgaacggtat
aaagacgccaaacgccgtcgttcccagttactgcgcaactataaaattcaggaagttatc
aagcgccggcaaattctgcttattcaggtcgttaaagaagaacgcggcaacaaaggcgca
gcgctgacaacatacatgtcgctggctggccgttattgcgtgcttatgcccaacaccgcg
cgcggcggcggcatttcccgaaaaattccgcattcggcggaccgccggcgattacgccgc
gcagtcgatagcctggacgtgccgcagggtatgggactgatcatccgcaccgccggcgcc
aagcgcactaagacggaaatcaagcgcgattatgattatctcctgcggctatgggagacc
atccgcacactgacgctgaaatcgattgcgccctgcctcatctacgaagaagcaagcctg
atcaaacgcgccattcgcgatttgtacgacaaggatatttccgaagttcaggtggaaggc
gagaacggttatcgtgaagccaaagacttcatgaaaatgctgatgccgtctcacgcgaag
ttcgttcagccgtacaaggatcaagcgccgattttccttaaacacggcgttgagcaacag
cttgacggcatgtatcagccgacggtgcgactcaaatccggcggctatatcgtcatccac
cagaccgaagcgctggtggcgattgacgtcaactccggccgggcgacacgcgaacgcaac
attgaacagaccgcccttaagacgaacatcgaagccgcctatgaagcagcgcgacagttc
cgcctgcgcgaccttgccggtcttatcgtccttgatttcatcgacatggaagagccgcgc
aacaatcgtaaagtcgaaaaggcgctgaaagacgcgatcaagtcagaccgggcccgcatt
caacttggccgaatctcaaatttcggtctgcttgagatgtctcgtcagcgccgccgttcg
ggtatcgttgacggtacgacgcaaagctgccccacatgcgttggcgctggcgttatccgt
tcagcggagatggctgctctcagaattctacgcgctatcgaaggcgacgctgtttcgggc
aaagcgggaataatcgcgacgcacgcgtcaattgatgttgcagtttacattctcaaccag
caccgagaatggctgcggcggattgagcaagaacatggcgtaacgattgagatcgttcct
gaccgtgaaaaagctggtgacgactacacgctcgaaaaaagcggcacgccgaaaccacgt
ccagaagcgagcgccgttgtcaccgccgaccaaaaagaaatgatcgacgcagaagacatt
tccgaaccggatgtagataacgagtctgacgaacaaggcggcgaccgtaagaaacgccgc
cgccggcgccgcagaaaagacgcttccccgcgcgatgaccgatccgaagcagacagcgaa
gatcaggacagcgacaacaacgaagacaaaaaagagtctcgcaccagcgaaggtgatgat
gacgacggcgcacgcaagcgccgccggcgcgggcgtcgcggcgggcgccgcaatcgccgc
aaccggagcgaagaaacgaataccgagagtgaggccgctaaagaatcttcgagtgatgac
ggcaaaaagtctgatgatgaaccggatgccaccgcgccttctgacgctggcgacacttcg
actgcatccgatgaaccgacaacagaaatcaagagcaattcagacgctacagaggcggct
aaacccgtcaagaccaatgggtcgtcgcacgaacacgccgctgaatccccggacgacgca
aaagcgcccgagccacagccggaacaagcgcctgaggcgaaacaacctgttgatctggcg
gaggcgcctcaaccctcgccgccgaaacctaaaaaaaggggctggtggagccgcaacagc
aacgcttaa
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