Hyphococcus flavus: PUV54_14100
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Entry
PUV54_14100 CDS
T08821
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hfl
Hyphococcus flavus
Pathway
hfl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PUV54_14100 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hfl03400
]
PUV54_14100 (mfd)
Enzymes [BR:
hfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PUV54_14100 (mfd)
DNA repair and recombination proteins [BR:
hfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PUV54_14100 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SecA_DEAD
MFD_D3
Cas3-like_C_2
AAA_25
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WDI31084
UniProt:
A0AAE9ZB02
LinkDB
All DBs
Position
complement(2942086..2945601)
Genome browser
AA seq
1171 aa
AA seq
DB search
MADGAKTMVSGVVAISAEEAWTQDGTLDVYGAPEGADALAVADAARTSGDIVLHIARDGA
RAAAMAQSLKFFAPEIPVIEYPAWDCLPYDRVSPSPASTSKRMASLSAILKRGPGAFIVI
ASINAATQKTPPREIVENATLRLSPGEIMEMEALNRYLSANGYARSSTVREPGEYAVRGG
LVDIFPPGADEPVRLDFFGDTLESIRAFDAATQRTTRQLSGFSLAAASEILLSDETVSRF
RKGYVATFGPAGDDPLYEAISAGRMHAGAEHWLPLFYKEMHTLFDFVGDALVFTDHLAGE
ATEERRSQVADHFEARAEDTAIKRPKNSDFSAPVYRPLDPSKLYLTESEWNEKLAITNLR
PLSPFAPPVNVRAFNFGAKVGRSFAAERSAENINVFDAVNAHAVKLADQNKKVIISCWSE
GSADRMRTVLSDHGAKNISHIENWSTVNSITETIVTAVLGLESGFETQDAAFISEQDILG
DRLVRRGRKKRAENFLSEASSLSLADLIVHVEHGIGRYHGLKTLEVQGAPHDCLHLEYHG
GDKLFLPVENIELLSRFGSDDAGVQLDKLGGAAWQGRKAKMRARIKMLAEQLIAIAAKRA
MRSADVVSPGSGPYDEFCARFPYAETEDQENAIADVIEDFAKGQPMDRLVCGDVGFGKTE
VALRAAFVMAMTGRQVAVVTPTTLLARQHYKNFSERFKGFPLKVAQLSRMVSTADAKAVK
DGAAAGTVDIIIGTHALLQNTIKFRDLGLVIVDEEQHFGVKHKERLKEYRADTHVLTLTA
TPIPRTLQLAMSGIRDLSLIATPPVDRLAVRTTVGPFDPVVARETLLREHYRGGQSFYVA
PRIADLDDIAEFLSDELPELKFKIAHGQMGSGELEDIMTAFYEGKFDVLVSTTIIESGLD
IPTANTMIVHRADMFGLGQLYQLRGRVGRSKQRAYAYLTVSARKKMTDAAERRLKVMQSL
DTLGAGFTLASHDLDIRGAGNLLGEEQSGHVKEVGVELYQHMLEEAVAELREGSAVSDEQ
WSPQINIGTTVLIPETYVADLDVRMALYRRLGDVTSQEEIDGFAAELVDRFGPMPSEAEH
LLEIVSIKSVCRQAGIAKIDAGPKGAVITFHKDQFANVAGLIEFVSSSPLDVKLRPDQKF
VIRQEWAGEKARLKGAKRIADTIASIVAKAA
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcgcaaaaactatggtttcaggggtggtggcgatcagcgccgaggaagca
tggacgcaagatggcacccttgatgtttatggcgcgccggagggagcggatgcgctggct
gtcgccgatgcagcacgcacgagcggcgatatcgtcctccatattgcccgcgacggcgca
cgagcggccgcaatggcgcagagcctcaaattttttgcaccagaaattccggtgatcgaa
tatcctgcctgggattgccttccttacgatcgcgtatcgccatcacctgcgtcgacgtca
aaacgtatggcgagcctctccgcaattctgaaaagggggcccggtgcattcattgtcatc
gcatcgattaacgcagcaacccaaaaaacgccgccacgagaaattgtcgagaatgcaacg
ctgagactgtccccgggggaaataatggagatggaggctcttaaccgctatctcagtgcg
aacgggtacgcacggtcttcaacagtccgcgaaccaggtgaatatgccgtacgcggcggg
ctggtcgatatctttccgccgggtgctgatgagccggtccgtctcgacttttttggcgac
acattggaaagcatacgcgcttttgacgccgcaacgcaacggacgacgcgtcagctttct
ggcttctcactcgctgcagcgagtgaaatcttgttgtctgatgagacagtctcacggttt
cgaaaaggctatgttgctacgttcggacccgcaggagacgatcccctttatgaagcgatc
agcgcagggcgcatgcatgctggtgccgaacactggttgccgctgttttataaagaaatg
catacgctctttgattttgtcggcgatgctcttgtatttaccgatcacctcgcaggggag
gcaacggaagagcgccgttctcaagtcgcggaccattttgaagcgcgtgcagaagatact
gctataaaacgccctaaaaacagtgatttttccgcacctgtttacaggccgctcgaccct
tcaaaactctatctgacggaatcagaatggaatgaaaagctggcaatcactaatttgcgc
ccactttcgccatttgcgccgccggtaaatgttcgcgcctttaactttggcgccaaggtc
ggtcgcagttttgcagctgagcgttcagcggaaaatatcaatgtcttcgatgctgtaaac
gcacatgcggtaaaactcgctgatcagaacaagaaggtgatcatttcatgctggtccgag
ggttcagcagaccgcatgcggacggtgctgagcgaccacggcgcgaaaaacatctctcat
attgagaactggagcacggttaactcaataactgaaacaattgtcactgccgtgctgggg
cttgagagcggatttgaaacgcaagatgcggcgtttatttcagagcaggatatactgggt
gatcgccttgttcggcgagggcgaaagaaacgcgcagaaaactttctttccgaggcctcg
agcctgtcattagcagacctgatcgttcatgtggaacacggcattggtcgttatcacggg
ctgaaaacactggaagtgcagggcgccccgcatgattgtctgcacctcgaataccatggc
ggcgataaactttttctgccggttgaaaacattgagctcctgtcgcgctttggatcagac
gacgctggcgtgcaactcgacaagctgggcggcgcagcctggcaagggcgaaaagcgaag
atgcgtgcgcgcatcaaaatgctcgctgaacagctcattgcgatagctgcgaaacgcgcc
atgcgcagtgctgacgtcgtgtcgccgggcagtggtccgtacgacgagttttgcgctcgt
tttccttatgcagagactgaagatcaggaaaatgcaatcgccgacgtaattgaggatttt
gccaagggacaaccgatggaccgcctagtgtgtggggatgtgggtttcggtaaaaccgag
gtggcgttgcgcgccgcctttgtcatggcgatgactggccgacaggttgccgtggtaacg
ccaacaacgttgctcgcacgtcagcactacaagaacttttccgagcgctttaaaggattt
ccgcttaaagtcgcgcaactttcgcgcatggtttcgacagcggacgccaaggctgtgaaa
gacggcgctgccgcaggaaccgtcgatatcatcatcggcacccatgcattgctgcaaaat
acgataaagtttcgtgatcttggtctcgtcattgtcgatgaagaacagcattttggcgtg
aagcataaagaacgcctcaaagagtatcgcgctgatactcatgtgctgacgcttacggca
acgccgatccctcgcacgctgcagcttgccatgagcggcattcgcgatctttccttgatc
gctacgccgcctgttgaccgtcttgccgtccgcaccactgtcggtccgttcgatcctgtg
gtggcgcgggaaacattgctgcgtgaacactatcgtggcgggcaaagcttttatgtggcg
ccgagaatcgctgatctcgatgatattgctgaattcttgagcgacgaacttccggaactg
aaattcaaaatcgctcatggtcagatgggttccggcgaacttgaagacatcatgacggcg
ttctacgaaggcaagtttgacgtgcttgtttctacaacaattatcgaatctggcctcgac
attcccaccgcgaatacgatgattgttcaccgcgccgatatgttcggtttaggccagcta
tatcaactccgcggtcgtgttggacgatcgaaacaacgcgcctatgcttacctgaccgta
agcgcgcgcaagaaaatgacggatgcagcggaacggcggttgaaagttatgcagtcgctc
gacacgctcggcgccggtttcacactggcgagccacgaccttgatattcgaggcgcgggt
aaccttctcggggaagaacagtcgggtcacgtcaaagaagttggcgttgaactgtatcag
cacatgcttgaagaagctgtcgccgaattacgcgaggggagcgctgtaagcgatgaacaa
tggtctccgcaaatcaatatcggtacgacggtgcttatccctgaaacttatgtagccgac
ctagatgtacgcatggcgctctatcgccgccttggcgacgtcacgtctcaggaagagata
gacggcttcgcggcggagcttgtcgatcgtttcgggccgatgccttccgaggcggaacat
cttctggaaatcgtttccatcaaaagcgtttgccggcaagctggcattgctaagatcgac
gccggtccaaaaggggcggtcataacgttccataaagaccagtttgcaaatgtcgcaggg
cttattgaatttgtttcgagttcgccactggacgtgaaactgcgtccggaccagaagttt
gttattcgtcaggaatgggccggggaaaaagcgcggctcaagggcgccaagagaattgcc
gatactattgcgtcaattgttgcgaaagcggcttga
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