Hyphococcus formosus: ABFZ83_03085
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Entry
ABFZ83_03085 CDS
T10776
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hfo Hyphococcus formosus
Pathway
hfo03018
RNA degradation
Brite
Enzymes [BR:
hfo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ABFZ83_03085
Messenger RNA biogenesis [BR:
hfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABFZ83_03085
Ribosome biogenesis [BR:
hfo03009
]
Prokaryotic type
rRNA processing factors
ABFZ83_03085
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XMO97518
LinkDB
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Position
complement(672783..675596)
Genome browser
AA seq
937 aa
AA seq
DB search
MTKKMLIDAAHPEEVRVAVLDNGKVEDFDFESESRKPLRGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVSDRLALQEAEAEVVELAAQLELTQRGDDDDDQDDEKP
KKKARSASDDEEADDDDLSSDDGDESDSDDDPTDEIAEPDRDEEEEEEQDGEEDQDGKVK
AAKEETSEDTLELTKEDQVPSDESASDENTEGSTEVTAQETENVSEEHSDDGEASEVSAN
ETVEAADDEEVSNDDADEAEESDEAEQDDASGQNGESRQALFERYKEAKRKRANLLRNYK
IQEVIKRRQILLIQVVKEERGNKGAALTTYMSLAGRYCVLMPNTARGGGISRKIPHSTDR
RRLRRVVDSLDVPQGMGLIIRTAGAKRTKIEIKRDYDYLLRLWENIRTLTLKSIAPCLIY
EEASLIKRAIRDLYDKDISEVLVEGEAGYREAKDFMKMLMPSHAKFVQPFKDKAPLFLKH
GVEAQLDGMYQPTVRLKSGGYIVINQTEALIAIDVNSGRATRERNIEQTALKTNIEAAYE
AARQFRLRDLAGLVVLDFIDMEEPKNNRKVEKALKDAVKHDRARIQLGRISNFGLLEMSR
QRRRSGIIDGTTQSCPTCAGAGVIRSAEMAALRILRALEAEAISGKAGILSAHASLDVTV
YVLNNHRDWLKRIEDHYGVTVQMIPNTDRAGDDYDIEKSGTPRERSEVAQVIQADQTDMI
EAVEDPTHEASESEEKDGERKKRRRRRRRKDKDTSAQASDSQSSDADATSETTDASDDSD
EQQSKDGEEEQGRRRRRRGRRGGRRNRRGRNNENTSESNDETGVAASSDDSAESAQAESA
QADDSADKKSDDQPAEEPKTTAKEAEVEVAAEPEVKTNGAHPPQNGANGHDGNQDTVEQK
EADPQTQDSPEESASNSTENEKPKPKKRGWWRRGSDA
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaagatgctgatcgacgcggcccacccggaagaggtgcgcgttgcggtgctc
gacaacggcaaagtcgaagacttcgacttcgaatccgaatctcgcaagccacttagaggc
aatatctatctcgcacgggtcacccgtgttgaaccatctctccaagccgctttcgttgaa
tatggcggaaatcgccatggctttttggcgttcagcgagatccatccggattattatcaa
atccctgtttctgatcggctggccctccaagaggctgaagccgaagtggttgaactcgca
gcgcagttggaactgacccaacgcggcgatgacgacgacgatcaagacgacgaaaagcca
aagaaaaaggctcggtctgcttccgatgatgaagaagcggatgatgatgacctctcttca
gatgacggcgacgaatcggatagcgacgatgatcctacggatgaaatcgctgagcctgat
cgcgacgaagaagaggaagaagaacaggacggcgaagaagaccaagacggcaaggtcaaa
gctgccaaagaagaaacatctgaagatacgcttgaactgacaaaagaagatcaagtccct
tcagacgaatccgcttctgacgaaaacacggaaggatccaccgaagtcacagcgcaggaa
actgaaaatgtttctgaggagcattccgacgacggagaagcatcagaagtttctgcgaat
gaaactgtcgaagctgcggatgacgaagaagtcagcaacgacgacgctgacgaagcagaa
gaaagcgacgaagccgaacaggatgacgccagcggccaaaacggagaaagccgccaggcc
ctgtttgagcgttataaagaagcaaaacgcaaacgcgcgaacctcctgcgcaattataag
atccaggaagttattaagcgccgtcagatcctgttaattcaggttgttaaagaagagcgc
ggcaataaaggtgcggcgcttacaacctatatgtctttggccggtcgttattgtgtattg
atgcctaacacggcacgtggcggcggcatttcgcgcaaaattcctcattctacggatcgc
cgccgtttacgccgtgtcgttgatagtcttgatgtgccacagggcatggggctgattatc
cgcacagcgggcgcgaaacgtacaaagatcgaaatcaaacgcgactatgattatctatta
cggctttgggaaaacattcgtaccctgacgctaaaatcgatcgcgccctgcctcatctac
gaagaagcgagcctgatcaaacgcgcgattcgcgatctatatgacaaagatatctcggaa
gttctggtcgaaggcgaagccggttatcgtgaagccaaagacttcatgaaaatgctgatg
ccgagccacgcaaagttcgtgcaaccattcaaagataaagcgccgttattcctcaaacac
ggtgtcgaagcacaacttgatggtatgtatcagccgacagtacgcctcaagtctggcggc
tatattgtcatcaatcagaccgaagcgctcatcgcaatcgacgtcaactccggacgcgcc
acccgcgaacggaatattgaacaaacggcgttaaagacgaatatcgaagccgcctatgag
gccgcgcgtcaattccgcctgcgtgaccttgctggccttgtcgtgcttgatttcatcgac
atggaagagccgaagaataatcgcaaggttgaaaaggcactaaaagatgcggtcaaacat
gaccgcgcgcgtatccaattgggtcgcatctcgaattttggattgctcgaaatgtcgcgg
caacgtcgccgttctggcattattgatggcacgacacagtcctgcccgacttgtgccggt
gcgggtgttattcgttccgctgaaatggctgcgttacgtattctgcgcgccctcgaagca
gaagcaatttcgggcaaagcgggaattctgtcagcccatgcatcgcttgatgtcactgtt
tatgttctcaacaatcatcgtgactggttgaaacgtatcgaagatcattacggcgttacg
gttcaaatgattccgaatacggatcgtgcgggcgatgattacgacatcgagaaaagcggc
acaccgcgcgagcggtcggaagttgcacaagttattcaggccgatcaaaccgacatgatc
gaagcggtggaagatcccacgcatgaagcaagcgagagtgaagaaaaggacggcgagcgg
aaaaaacgtcgccgtcgtcgtcgtcgcaaggacaaagacaccagcgcacaggccagcgat
agccagtcatcagatgctgatgcgacgagcgaaaccaccgacgcatcggatgatagtgac
gaacaacaatcgaaagacggtgaagaagaacaaggccgccggcgccgtcgacgcggacgg
cgtggcggacgccgtaaccgtcgtggccgcaacaacgaaaataccagcgagtccaatgac
gagaccggtgtagccgcgtcgtcggacgattctgcagaatccgctcaggctgaaagtgcc
caagccgatgacagcgccgataaaaagtcagacgatcaacctgctgaggaaccaaaaacc
accgccaaagaggcagaggttgaggtcgcggcagaaccggaagtcaaaaccaatggcgcg
cacccaccgcagaatggtgcgaatggtcacgatggcaatcaggacaccgtagagcagaaa
gaagccgatccacagacgcaagacagtccagaggaaagcgcttctaattcaactgaaaat
gagaaaccgaaacccaagaaacggggttggtggcgacgcggaagcgacgcctag
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