Hyphococcus formosus: ABFZ83_03500
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Entry
ABFZ83_03500 CDS
T10776
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hfo Hyphococcus formosus
Pathway
hfo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hfo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABFZ83_03500 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hfo03021
]
ABFZ83_03500 (rpoB)
03400 DNA repair and recombination proteins [BR:
hfo03400
]
ABFZ83_03500 (rpoB)
Enzymes [BR:
hfo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABFZ83_03500 (rpoB)
Transcription machinery [BR:
hfo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABFZ83_03500 (rpoB)
DNA repair and recombination proteins [BR:
hfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABFZ83_03500 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
XMO97599
LinkDB
All DBs
Position
766592..770671
Genome browser
AA seq
1359 aa
AA seq
DB search
MAQSFVEKKRIRKNFGRIGDAAPMPNLIQVQKDSYEQFLQRFIKAEDREIDGLEAVFRSV
FPISDFTETATLEYVSYEFEDPKYDTEECQQRDMTYAAPLKVTLRLIVFEVDEETGAKSV
KDIKEQEVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDRGKSHSSGKLLFAA
RIIPYRGSWLDFEFDVKDIVNVRIDRRRKLPATTLLYALGMDQEEILDEFYDRVSHRKIE
TGWTMPFNPERWKGVKVDRDLINAKNGEIVLEAGKKLSARAAKKLAEEGLEELLLSDQEM
VGRYFASDLVNFDNGEIYAEAGEEITEDHLETFAEIGIEAFDTIDVDHLNIGAYIRNSLN
ADKNRNREMALIDIYRVMRPGEPPTLETAEGLFYSLFFDPERYDLSSVGRVKMNIRLNFE
TEDTLRTLRKEDILAVLKTLTNLRDGRGEIDDIDNLGNRRVRSVGELMENQYRIGLLRME
RAIKERMSSAELDTLMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHAQVNKYGFIESPYR
RVEDGKVTDEVIYLSAMEEQRFAIAQANAEVDEEGRLANEFVNCRVGGDATLVPREDVAY
IDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLQAEAPFVGTGMEAVVARDS
GAAVSARRAGIVEQVDAQRIVIRATEENDPTKPGVDIFNLRKFQRSNQNTCINQRPLVKI
GDIVREGDIIADGPSTDLGELALGKNVLVAFMPWNGYNFEDSILISERIVRDDVFTSIHL
EEFEVMARDTKLGPEEITRDIPNVSEEALRNLDEAGIVAIGAEVHPGDILVGKITPKGES
PMTPEEKLLRAIFGEKASDVRDTSLKLPPGVAGTVVEVRVFNRHGVDKDERAIAIEREEI
ERLAKDRDDELAILERNIYGRLKPLLLGKEAVSGPKGFESGQVTETILEEQLSRGQWWKI
GVADEAVMGEIEALKKQYDDSKARLEARFEDKVDKLKRGDELPPGVMKMVKVFVAVKRKL
QPGDKMAGRHGNKGVISKIAPMEDMPFLADGTPVDIVLNPLGVPSRMNVGQILETHLGWA
CRGLGRQIGNVLEEWDNGSKTREDLIAELKHVYGDEQVLPRSNEELKELGTNLIRGVPIA
TPVFDGAREAEIIDMLQRAGLEDSGQVTLYDGRTGETFKRKVTVGYKYLLKLHHLVDDKI
HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK
VYEAIVRGDDSFEAGIPESFNVLVKEMRSLGLNVELQNG
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaatccttcgttgagaagaaacgcattcgtaaaaatttcggtcgtatcggcgat
gcggctccaatgccgaaccttattcaggttcaaaaagactcctacgaacagttcctgcag
cgattcatcaaggcggaagatcgtgagatcgacggcctcgaagctgtattccggtctgtg
tttccgatttcggatttcacagagaccgcaacgctggaatatgtgtcttacgagttcgaa
gatcccaaatatgacaccgaggaatgtcagcaacgtgacatgacctatgcagcgccgttg
aaggtgacgctgcgccttatcgtctttgaggtcgatgaggagactggtgcgaagtccgtc
aaggacatcaaggaacaagaagtctatatgggcgacatgccgctcatgacggacaatggt
acgttcatcgtgaacggtaccgagcgcgtgatcgtatcgcagatgcaccgttcgccgggt
gtgttcttcgatcatgaccgcggcaagagccattcatcgggcaagctgttgtttgctgcg
cggattattccttaccgtggttcgtggcttgattttgaatttgacgtgaaggacatcgtc
aatgtccgtatcgaccgtcgccgtaaattgccggcgacaacgctgctttatgcgctcggt
atggatcaggaagaaatcctcgacgagttctatgaccgcgtttcccaccggaagatcgaa
accggttggacaatgccgttcaacccagagcgctggaaaggcgtgaaggtcgatcgcgac
ctgatcaacgctaagaatggcgagatcgttctggaggccggtaaaaagctttctgcgcgc
gccgcgaaaaagctggcggaagaggggctcgaagagcttctgctttctgatcaggaaatg
gttggccgctatttcgcttctgaccttgtcaatttcgacaatggtgagatctatgcggaa
gctggtgaagagatcaccgaagaccaccttgagacatttgcggaaatcggcatcgaagcg
tttgatacgattgacgtcgatcacctcaatatcggtgcgtatatccggaactcgctgaac
gcggacaaaaaccgcaatcgcgaaatggcactgatcgatatttatcgtgtgatgcgtccg
ggtgagccgcccacattggaaacggctgaaggcctgttctattcgctgttctttgaccca
gagcgctatgacctttcatcggttggccgggttaagatgaacatccgtctcaatttcgag
accgaggacacgcttcgcaccctgcgcaaggaagacattcttgcggttctgaaaaccctg
accaatctgcgtgatggccgcggcgagatcgacgatatcgacaatctcggcaaccgccgt
gtgcgttcggtcggtgagttgatggaaaatcaatatcgcatcggcttgctccgcatggag
cgcgcgatcaaggaacgcatgtcatcagctgagcttgatacgctgatgccgcatgatctg
atcaacgcgaagccggctgcggcggcggtgcgcgagttctttggttcgtcacagctttcc
cagttcatggaccagacaaacccgctttcagagattacgcataagcgtcgtctctcagcg
cttggtccgggcggtttgacccgtgagcgtgcgggctttgaggtccgtgacgttcatcca
acgcactatggccggatctgcccgattgaaacgcctgaggggccgaatatcggtctgatc
aactcgctcgcgacacatgcgcaggtgaataaatatggcttcatcgagagcccatatcgc
cgcgttgaagacggtaaggtgaccgacgaggtcatctatctgtcggcgatggaagagcag
cgctttgcgattgcgcaggcgaatgcggaagtcgacgaggaaggccgtctggcaaacgaa
ttcgtcaactgccgtgttggtggtgacgcaacattggtaccgcgtgaagacgtggcctat
atcgacgtttcgccaaaacagcttgtttctgttgctgcggcgctcatcccattccttgag
aatgacgatgcgaaccgcgcgttgatgggatcaaacatgcaacgtcaggccgtgccgctg
cttcaggcagaggcaccgtttgtcggtaccggcatggaagcggttgtggcgcgcgattct
ggtgctgcggtttctgcacgtcgtgcaggtatcgttgagcaggtcgatgcgcagcgtatc
gttatccgcgcaaccgaagagaatgacccgacgaagccgggcgttgatatcttcaatctg
cgcaagttccagcgttcgaaccagaacacctgtatcaaccagcgtccgctcgtgaaaatc
ggtgacattgttcgcgaaggcgacatcattgccgatggtccgtcgacggatctgggtgaa
ctggcgctcggtaaaaacgtgctcgtggcgttcatgccgtggaacggatacaactttgag
gactcgatcctcatttctgagcgtatcgtgcgcgatgacgtgttcacttccatccacctc
gaagaattcgaagtgatggcgcgggatacgaaactcggcccggaagagattacccgcgat
attccaaacgtatcggaagaagcgctgcgtaacctcgacgaggccggtatcgttgccatt
ggtgctgaagttcatccgggcgatattctcgttggtaagatcacgccaaaaggcgaatcg
ccaatgacgccggaagaaaagcttctgcgcgcgatctttggtgagaaagcgtctgacgtt
cgtgatacttcgctgaaactaccgccaggtgttgctggtacagttgttgaggttcgtgtc
tttaaccgtcacggtgtcgacaaggacgaacgcgcgatcgcgatcgagcgtgaagaaatc
gaacgtctcgcaaaagaccgcgacgacgaactcgcgatccttgagcgcaacatctatggc
cgtctcaagccattgcttctcggtaaagaggccgtgtcaggtccaaaaggatttgaatcc
ggtcaggtcaccgaaactattctcgaagagcagctttcacgcggtcagtggtggaagatc
ggtgtcgccgacgaagcggtcatgggcgaaatcgaagcgctcaagaaacagtatgacgac
tctaaagctcgcctcgaagcgcgctttgaagacaaggtcgacaagctcaagcgcggtgac
gaactaccgccgggcgtgatgaagatggtcaaagtctttgtggccgtgaagcgtaagctt
cagcccggcgacaagatggctggtcgtcacggaaacaaaggtgtgatttcgaaaatcgca
ccgatggaagacatgccgttccttgctgacggtacgccggtcgatatcgttcttaacccg
ctcggcgttccttcgcggatgaatgtgggtcagattctcgaaacgcatcttggttgggcg
tgtcgaggtcttggccgtcagattggcaatgttctcgaggaatgggacaatggttccaag
actcgcgaagatctcattgctgagctgaaacatgtttatggcgacgagcaggttcttccg
cgttccaatgaggaactgaaagagcttggtacgaacctcattcgcggtgttccgattgcg
acgccagtctttgatggtgcgcgcgaagcggaaatcatcgacatgttgcaacgtgccggt
cttgaagattccggtcaggtcacgctctatgatggccggacgggtgaaaccttcaagcgt
aaggttacggtggggtataaatacctcctcaagctgcatcaccttgtcgacgacaagatc
cacgcgcgttcgattggtccatactcactggtcacgcagcagccattgggcggtaaagcg
caatttggcggccagcgcttcggtgagatggaagtctgggcactcgaagcctatggcgcg
gcttatacgctacaggaaatgctgacggttaagtcagatgacgttgcgggccggaccaag
gtttatgaagcgattgttcgtggtgatgactcgttcgaagcgggtatcccggaaagcttc
aacgtccttgttaaggaaatgcgttcactcggccttaatgtcgagcttcagaacgggtga
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