Herbaspirillum frisingense: G5S34_00530
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Entry
G5S34_00530 CDS
T06761
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hfr
Herbaspirillum frisingense
Pathway
hfr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hfr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G5S34_00530 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hfr03021
]
G5S34_00530 (rpoC)
03400 DNA repair and recombination proteins [BR:
hfr03400
]
G5S34_00530 (rpoC)
Enzymes [BR:
hfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G5S34_00530 (rpoC)
Transcription machinery [BR:
hfr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G5S34_00530 (rpoC)
DNA repair and recombination proteins [BR:
hfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G5S34_00530 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QNB05410
LinkDB
All DBs
Position
116323..120564
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFIAFM
GAEGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNK
EVELATRITVRIVEHPKDPVTGEFVRTVKRYETTIGRAILSEILPKGLPFSVLNRALKKK
EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIAAAES
EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVVTREGKKTTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEALRDRI
LGRVAATDIVNPEDQATLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLCAKCY
GRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR
FTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGMTIKAGTALA
TWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGPSSKVMRPQV
KLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGTKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQVVEPGDTNYITGEQVERSELLDENDRVNAEGKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDAWEAEE
RAALLEAERASRSEFGDEEVSSAESFGGVEGEA
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctattcaagcaagtccagcaaaacgaacaattcgacgcgatc
aagatcggtctggcctcgcctgacaagatccgttcgtggtccttcggcgaagtcaagaag
ccggaaaccatcaactaccgtaccttcaagcccgagcgcgatggcctgttctgcgccaag
atctttggccccatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtggaagtgaccctggccaaggtgcgccgtgag
cgcatgggccacatcgagctggcttcccccactgcccacatctggttcctgaagtcgctg
ccatcccgtctgggcatggtgctggacatgaccctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctatgtcgtgaccgatcccggcatgaccccgctgaagaagtgccagatcatg
tccgaagacgactacgccgccaagtacgaagagtacggtgacgacttcatcgccttcatg
ggcgccgaaggtatccgcgaactgctgcgctcgatcgacatcgaccgcgaagcggaaacc
ctgcgccaggaactcaaggactccaagtccgaagccaagatcaagaagtacgccaagcgc
ctgaaggtgttggaggcgttccagcgctcgggcatcaagcctgagtggatgatcatggaa
gtgctgcccgtgctgccgccggaactgcgtccgctggtgccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgtctgaag
cgattgatggagctgcgcgcacctgaaatcatcacgcgcaacgaaaagcgcatgctgcag
gaagcggttgactcgctgctggacaacggtcgtcgcggcaaggccatgaccggcgccaac
aagcgcccgctgaagtcgctggccgaaatgatcaagggcaagggcggtcgtttccgtcag
aacctgctgggcaagcgcgtggactactcgggccgttcggtcatcgtggtgggtccgcag
ctgaagctgcaccagtgcggcctgcccaagctgatggccctggaactgttcaagcccttc
atcttcaacaagctggaactgatgggtctgtcgaccaccatcaaggctgccaagaagctg
gtggaagcacaggaaccggtggtctgggacatcctggaagaagtcatccgcgaacacccg
gtcatgctgaaccgcgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggtc
ctgatcgaaggcaaggcgatccagctgcacccgctggtctgcgcggcgttcaacgccgac
ttcgacggcgaccagatggccgtccacgttccgctgtcgatcgaagcgcagatggaagcc
cgcaccctgatgctggcctccaacaacatcctgttcccgtccaacggcgaaccgtccatc
gtgccgtcccaggatatcgtgctgggtctgtactatgctacccgtgaagccatcaacggc
aagaacgaaggcatgatgttccaggacgtctcggaagtgatccgcgcctacgacaacaag
gaagtcgagctggcgacccgtatcacggtgcgtatcgtcgaacatccgaaggacccggtc
accggtgaattcgtgcgtaccgtcaagcgctacgagaccaccatcggccgcgccatcctc
tccgagatcctgcccaagggcctgccgttctcggtgctgaaccgcgcgctgaagaagaag
gaaatctccaagctcatcaacacgtccttccgcaagtgcggtctgcgtgccaccgtcgtg
tttgccgaccagctgatgcagtcgggcttccgcctggcgacccgcgccggtatctcgatc
tgcgtggacgacatgctggtgccgccgcagaaggccaccctgatcgccgctgccgaatcc
gaagtcaaacagatcgagcagcagtactcctccggtctggtgaccgcgggcgagcgctac
aacaaggtcgtggacatctggggcaaggccggtgacgaagtcggcaaggccatgatggac
cagctgaaggtggaagacgtcgtcacgcgcgaaggcaagaagaccacccaggagtccttc
aacgcgatctacatgatggccgactccggcgcccgtggttcggccgcccagatccgccag
ctggccggtatgcgcggcctgatggccaagcctgacggctccatcatcgaaacgccgatt
accgcgaacttccgcgaaggtctgaacgtgttgcagtacttcatctcgacgcacggcgcc
cgtaagggtctggccgacaccgcgctgaagaccgccaactccggttacctgacccgtcgt
ctggtggacgtgacccaggatctggtcgtgatcgaagacgattgcggcacctccaacggt
tcggccatgaaggccctggtcgaaggcggtgaagtcatcgaagccctgcgcgaccgtatc
ctgggccgcgtggcagcgaccgacatcgtcaatccggaagatcaagccaccctgttcgaa
gccggcaccctgctggatgaagacaaggtcgaagagatcgaacgcatgggcatcgacgaa
gtcaaggtccgcaccccgctgacctgcgacacccgttatggtctgtgcgccaagtgctat
ggccgcgacctgggccgtggcctgctggtcaactccggcgaagccgtcggcgtggtggca
gcgcagtccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggt
gcggcgtcgcgtgcagcagtggcctcctcggtggaagccaagtccaacggtaccgtgcgc
ttcaccgccacgatgcgttatgtgaccaatggcaagggtgaacagatcgtcatttcccgt
tccggcgaagtgttgattaccgacgacctgggtcgtgagcgcgagcgtcacaaagtgccg
tacggcgccaccctgatcgtcaaggatggcatgaccatcaaggctggtaccgcactggcg
acctgggatccgctgacccgtcctatcatcaccgagtactccggtaccgtgaagttcgag
aacgtggaagaaggctccaccgtggccaagcagatcgacgaagtcaccggtctgtcgacc
ctggtggtcatcgatgcgaagcgtcgtggtccgtcctccaaggtcatgcgtccgcaggtc
aagctgttgaacgaacagggcgaagaagtgaagatcgccggcaccgaacactcggtgacc
atcggcttccaggtcggcgcactgatcaccgtcaaggacggtcagcaggtgcatgtgggt
gaagtgctggcccgtatcccgaccgaatcgcagaagacccgtgacattaccggtggtctg
ccgcgcgtggccgaactgttcgaagcacgttcgcccaaggatgccggcatgctggccgaa
gtcactggtaccgttgcgttcggcaaggaaaccaagggcaagcagcgtctggaaatcacc
gacatggaaggcaccaagcacgagttcctgatcaccaaggacaagcaggtgctggtgcac
gatggccaggtggtgaacaagggcgaaatgatcgtggacggtccggccgacccgcaggac
atcctgcgtctgctgggtatcgaagcgctggcccgttacatcgtcgacgaagtgcaggac
gtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaagtgatcgtgcgccag
atgctgcgccgcgtgcaagtggtggagccgggcgacaccaactacatcaccggtgagcag
gtcgagcgctccgaactgctggacgaaaacgaccgcgtgaacgccgaaggcaagatcccg
gcgacctacgaaaacgtgctgctgggtattaccaaggcatcgttgtcgaccgactccttc
atctcggccgcatcgttccaggaaaccacccgcgtgctgaccgaagccgcgatcatgggc
aagaaggacggcctgcgcggtctgaaggaaaacgtcatcgtcggccgcctgatcccggcg
ggtaccggcctggccttccaccgcgcccgcaaggaaaaggatgcatgggaagccgaagag
cgtgcagcactgctcgaagccgaacgtgcctcccgctccgagttcggcgacgaggaagtc
tcctcggccgaatccttcggcggtgtcgaaggcgaagcgtaa
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integrated database retrieval system
