Herbaspirillum frisingense: G5S34_02185
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Entry
G5S34_02185 CDS
T06761
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
hfr
Herbaspirillum frisingense
Pathway
hfr03030
DNA replication
hfr03410
Base excision repair
hfr03420
Nucleotide excision repair
hfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G5S34_02185 (polA)
03410 Base excision repair
G5S34_02185 (polA)
03420 Nucleotide excision repair
G5S34_02185 (polA)
03440 Homologous recombination
G5S34_02185 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hfr03032
]
G5S34_02185 (polA)
03400 DNA repair and recombination proteins [BR:
hfr03400
]
G5S34_02185 (polA)
Enzymes [BR:
hfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
G5S34_02185 (polA)
DNA replication proteins [BR:
hfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G5S34_02185 (polA)
DNA repair and recombination proteins [BR:
hfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
G5S34_02185 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G5S34_02185 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QNB05706
LinkDB
All DBs
Position
469896..472658
Genome browser
AA seq
920 aa
AA seq
DB search
MQKTLLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYVACVFDA
KGKTFRDDLYPDYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSVQ
ATAAGLDTIISTGDKDMAQLVDEHVTLVNTMSNEVLDIAGVTAKFGVPPNRIVDYLSLIG
DTVDNVPGVEKCGPKTAVKWLTAYDSLDGVMANADKISGVVGENLRRALDWLPQGRVLVT
VKTDCDLSAHMKSILESLTMQPQDKEVLKDLFTRYNFRTWLRELADGGDAAVGKSPVVGA
VAAAALEVPAQGGLFAPATPMEYETVLTDAQLDQWIAAINAAELTAVDTETTSLEAMQAE
LVGISLCWEPGRAAYIPVGHNYQDAPPQLSREHVLEKLKPWLEDASKPKLGQHLKYDSHI
FANYGIRLAGVKHDTLLESYVFESHRPHDMDSLAARHLERKTITYAEVCGKGASQIGFNE
VAIERATEYAAEDAEVTLALHRAMWPQIEHDDKLRFIYEKIEVPTSVVLQKIERNGVLID
SERLGQQSHDLGCRMLEIEQQAYDLAGQPFNLNSPKQLGEILFGKLELPVVKKTASGAPS
TDEEVLQKLAEDYPLPKVLLDYRGLSKLKSTYTDKLPKMINPVTGRVHTNYAQAVAVTGR
LASNEPNLQNIPIRTAEGRRIREAFVAPEGSVIVSADYSQIELRIMAHISEDENMLKAFA
NNEDIHKATAAEIFGIAPEQVESEQRRYAKVINFGLIYGMSAFGLAGNLGIERSAAQMYI
DKYFMRFSGVKRYMDETRLQAKARGYVETVFGRRLWLPEINSPNGPRRQGAERAAINAPM
QGTAADLIKLAMIAVQDWLEKTGMQTRMIMQVHDELVLEVPQQELAVVREKLPELMKNVA
ELKVPLLAEVGIGKNWDEAH
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaaccttgttgttagttgatggttccagttacctctatcgcgcattccatgca
ctgcccgatatgcgtaacgcggaaggcgcgcccaccggtgcgctgtacggcatcatcaat
atgctgcgccgactgcgcaacgattatcccgcaagttacgttgcctgtgtgttcgatgcc
aagggcaagaccttccgtgacgatctgtatcccgactacaaggccacccgcaagtcgatg
ccggaagacctggcattgcagatcgaacccatccacgccgcggtgcgcgcgctgggctgg
cccatcctgatggtcgagggcatcgaggccgatgacgtcatcggtacgctgtcggtgcag
gccaccgccgccggtctggatacgatcatctccaccggtgacaaggacatggcccagctg
gtcgatgaacacgttaccttggtcaacacgatgagcaatgaagttctcgacattgccggc
gtgactgcaaaattcggtgtgccgcccaaccgtatcgtcgattacctcagcctcatcggc
gataccgtggacaacgttcccggggtggaaaagtgcggtcccaagaccgccgtgaaatgg
ctgaccgcctacgattcgctggatggcgtgatggccaatgccgacaagatcagcggcgtg
gtcggcgagaacctgcgccgtgcgctggactggctgccgcagggccgcgtgctggtgacg
gtcaagaccgattgcgacctgtcggcgcatatgaagtccatcctcgaatcgctgaccatg
cagccgcaggacaaggaagtcctgaaggacctcttcacccgctacaacttccgcacctgg
ctgcgcgaactggccgatggcggcgatgccgcggtgggcaagtcgccggtggtgggtgcc
gtggctgcggccgcgctggaagtgccggcccagggcggcttgttcgcacccgctacgccc
atggagtacgagaccgtgctcaccgatgcacagctggaccaatggatcgcggccatcaat
gcggccgagctgaccgccgtcgataccgaaaccacctcgctggaagcgatgcaggccgag
ctggtcggcatctcgctgtgctgggagccgggccgcgccgcctatatcccggtgggccac
aattaccaggatgcgccgccgcaattgtcgcgcgagcacgtgctggaaaaactcaagccc
tggctggaagacgccagcaagcccaagctgggccagcatctgaaatatgacagccacatc
ttcgccaactatggcattcgcctggcaggggtgaagcacgacacactgctggaatcctat
gtcttcgagtcgcaccggccgcacgacatggacagcctggcggcgcgtcacctggagcgc
aagaccatcacctacgccgaggtgtgtggcaagggagcgtcccagatcggcttcaacgaa
gtggccatcgaacgcgccaccgaatacgcggccgaggatgccgaggtcacgctggccctg
caccgcgccatgtggccgcagatcgagcacgacgacaagctgcgcttcatctatgaaaag
atcgaggttccgacttcggtggtgctgcagaagatcgagcgtaacggtgtgctcatcgac
agtgaacgcctgggccagcaatcgcatgacctcgggtgccgcatgctggagatcgagcag
caggcctatgacctggcaggccagcccttcaacctgaattcgcccaagcaactgggcgag
atcctgttcggcaagctggagttaccggtggtgaagaagaccgcttccggcgcgccctcc
accgacgaagaagtgctgcagaagctggccgaggactatccgctgcccaaggtgttgctg
gactatcgcggcctgtccaagctcaagtccacctacaccgacaagctgcccaagatgatc
aatccggtcaccgggcgcgtgcataccaactatgcgcaagccgtggcggtcaccggtcgc
ctggcctccaacgagcccaacctgcagaacatcccgatccgcactgccgaaggtcgtcgc
atccgcgaagccttcgtcgcgccggaaggcagcgtgatcgtctctgccgactattcgcag
atcgagttgcgcatcatggcgcacatctcggaagacgaaaacatgctgaaggccttcgcc
aacaacgaagacatccacaaggcgaccgccgccgaaatcttcggcatcgcgcccgagcag
gtcgagtcggagcagcgccgttatgccaaggtgatcaacttcggcctgatctacggtatg
agcgcctttggtctggccggtaacctgggcatcgaacgttcggcggcgcagatgtacatc
gacaagtatttcatgcgtttttcgggcgtgaagcgctacatggacgaaacccgtctgcag
gccaaggcacgcggctatgtggaaaccgtgttcggccgtcgcctgtggctgcccgagatc
aattcgcccaacggtccgcgtcgccagggggcggaacgggcggcgatcaacgcgcccatg
cagggtaccgccgccgacctcatcaagctggccatgatcgcggtgcaggactggctggaa
aagactggcatgcagacccgcatgatcatgcaggtgcacgatgaactggtgttggaagtt
ccacaacaggaattggcagtggtgcgtgaaaagctgcccgaattgatgaaaaatgttgcg
gagctgaaagttcccttgcttgccgaggtaggaatcggtaagaattgggacgaagcacat
taa
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