Herbaspirillum frisingense: G5S34_03370
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Entry
G5S34_03370 CDS
T06761
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
hfr
Herbaspirillum frisingense
Pathway
hfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5S34_03370 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hfr03019
]
G5S34_03370 (pcnB)
Enzymes [BR:
hfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
G5S34_03370 (pcnB)
Messenger RNA biogenesis [BR:
hfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
G5S34_03370 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
QNB05912
LinkDB
All DBs
Position
complement(730201..731829)
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AA seq
542 aa
AA seq
DB search
MIKKLIRSILGRGKAAAAAESAEPVKKSRAKAGTAGGKIEPDVLGPKQHGIDPALVSPNA
VRVTQTLQDAGYKAFIVGGAVRDLLLGIKPKDFDVATNATPEQVKQLFRRAFIIGRRFQI
VHVMFGQELIEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINAMYYDPAS
QTVLDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKLKFSIDPASSAPIRVM
APLIDNVPAARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFVSL
ALANTDARVKEGKGVSPGFLFASLLWHQVLEKWRAYQAAGEYPIPALHLAADDVLDAQTE
KLALQRKIASDMRDIWAMQPRFERRVGKAPYKLLEHLRLRAGFDFLLLRCQSGELDAELG
EWWEAFIAGNAAEREELIARKPADTASGSAGAGPKKRKRRGGRSRSKSVGDSGGNDGGDE
QQAAPAEVADAPARKPAAAPAEAVGEAGSEGGSAEAPKRRRRRSRTSTGGAGPDAAPTGD
EQ
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagaaactgattcgctccatcctgggccgcggcaaggctgctgcagccgcagag
agcgccgaaccggtcaagaaatcgcgggccaaggccggcactgcgggcggcaagatcgaa
cccgacgtgctcggccccaagcagcatggcatcgacccggcgctggtctcgcccaatgcg
gtgcgcgtgacgcagaccctgcaggatgccggctacaaggccttcatcgtcggcggtgca
gtgcgcgacctgctgctgggcatcaagcccaaggacttcgacgtcgccaccaacgccacc
ccggaacaggtcaagcaactgttccggcgcgccttcatcatcggccgccgttttcagatc
gtccatgtcatgttcggtcaggaactgatcgaggtcaccaccttccgtggcgcctcggcc
gaagctgcgcccaaggatgaacatggtcgcgtgctgcgcgacaataccttcggcgaacaa
catgaagacgcaacccgacgcgacttcaccatcaacgccatgtactacgatccggccagc
cagacggtgctggactatcacggtggcatcgccgacatccgcgacaagaagctgcgcatc
atcggcgagcccgaagcgcgctatcgcgaagacccggtgcgcatgctgcgcgtggtgcgc
ttcgcggccaagctcaagttcagcatcgaccccgccagcagcgcccccatccgcgtgatg
gcaccgctgatcgacaacgtgccggccgcacgcgtgttcgacgaaatgctgaagctgctg
atgagcggccatgccctggcctgcctgcagcaactgcgcaaggaaggcctgcaccatggc
ctgctgccgctgctggatgtggtgctggaacagccgctgggcgagaaattcgtcagcctg
gcgctggccaataccgacgcccgcgtcaaggaaggcaagggcgtctctccgggcttcctg
ttcgcctccctgctgtggcaccaggtgctggaaaagtggcgcgcctaccaggctgccggc
gaatacccgattcctgcgctgcacctggccgctgacgatgtgctggatgcccagaccgag
aagctggccctgcagcgcaagatcgcctcggacatgcgtgacatctgggccatgcagcca
cgcttcgagcgccgtgtcggcaaggccccctacaagctgctggaacacctgcgcctgcgc
gccggtttcgacttcctgctgctgcgctgccaatccggtgaactcgatgccgaactgggc
gaatggtgggaagccttcatcgccggcaacgctgcggaacgcgaagaactgatcgcccgc
aagccggccgatactgccagcggcagtgccggcgccggccccaagaagcgcaagcggcgc
ggtggccgcagccgcagcaagtccgtcggcgacagcggcggcaatgatggcggtgacgaa
cagcaggccgcgccggcagaagtggccgacgcgccagccaggaagcctgccgcggcgccc
gccgaggcagttggcgaagcaggcagtgaaggcggcagtgccgaagcgcccaagcgccgt
cgtcgccgcagccgcaccagtaccggcggtgcgggccccgatgcagcgcccaccggcgac
gagcagtaa
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