Herbaspirillum frisingense: G5S34_04220
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Entry
G5S34_04220 CDS
T06761
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
hfr
Herbaspirillum frisingense
Brite
KEGG Orthology (KO) [BR:
hfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hfr03400
]
G5S34_04220
Enzymes [BR:
hfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G5S34_04220
DNA repair and recombination proteins [BR:
hfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
G5S34_04220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
DUF2797
Motif
Other DBs
NCBI-ProteinID:
QNB06059
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All DBs
Position
921802..924585
Genome browser
AA seq
927 aa
AA seq
DB search
MLSATVPIAPTPDFWQQAVRLLLREGQPLGQALHSQTQAGAALDFSGVQLMVPAFSHAQN
FKAALARELRRPFIAPRINTLSGLLAMQVPGESAPPSESERLMQLYAQLREHGWLKKMFS
ARRNADLLPLAHTLLALSDELTLALLPEIRASAEGEQAAVGRWVQALAQLLEPLAPSAHG
MLSDEAALVWQVWKTQLDANDRIVQRFDAMLALAERASLPLVWVSPTAPEPLDAAFLATY
ARHQPVRIVTLDWSRQAIAPLHPVYLAAWEELVAGDEGVPPTFLEPATLPDPVPANAPAL
SLPLLCPAPDLESAAVQSAQIVLRWLEQGKGEIAIVAQDRVTARRLRALLERAEVAVADE
TGWKLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPDDPDRADRVMRIEARLRRA
NIAGDWQALQSAFAQAEDGADLACITLLARQAARFGGRKTLAQWCDTQRALCQALGMENA
LRDDGAGEQCLLMLDDIAAGQGGLEDSFSFAEWRALLNLRLDATSYMPPIKDRRVVMLPL
NGARLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNLVTRAERQRQQLRDLTELLC
VNHEVVLCWQTHQDGEPNPVSPWIQRLELKLAQQGMAPLRNVHWQAPLRKLQAQRSSMPA
PSAPELLPSSLSASGFGSFLACPYQFFAARMLRVAVMDELSDLPEKRDYGSWLHEILHRY
HAHLREQATPLAARPALLASISEEVFQREMQRHPAALAFHARWQKVMPAYLLWANEREAD
GWQFVFGEQSQSQALSWQDGGIELYGRLDRVDQNAQGERALLDYKTRSVASLRQKVKEED
DHQLAFYGLLAGGAIEHAHYVALELGSDKKTGDAAAPDFLRKQDMLKQQITTTLHQVAQG
APLPANGIESVCQYCDMRGLCRKGAWL
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcagccaccgtcccgatcgctcccactcccgacttctggcaacaggccgtgcgt
ctgttgctgcgcgaaggccagccactgggccaggccctgcacagccagacgcaggccggc
gcagcgctggatttctcgggtgtgcagctgatggtgccggccttctcccacgcgcagaac
ttcaaggccgcgctggcgcgcgaactgcggcggcccttcatcgcaccgcgcatcaatacc
ctctcgggtttgctggccatgcaggtcccgggcgagagcgcaccgccgtccgagagcgaa
cgcctgatgcagctctacgcccagctgcgcgagcacggctggttgaagaagatgttttcc
gcgcgccgcaatgccgatctcctgcccttggcccataccttgctggcgttgtcggacgag
ctgacgctggcgctcttgcccgagatccgtgccagcgccgagggcgagcaggccgctgtc
ggccgctgggtgcaggccctggcccaactgctggaaccgctggcgccgtcggcgcatggc
atgttgtccgacgaggccgcgctggtgtggcaggtctggaagacccagctggatgccaac
gaccgcatcgtgcagcgcttcgacgccatgctggccttggccgaacgcgccagcctgccg
ctggtgtgggtcagccccactgccccggaaccgctggacgcagccttcctggccacctat
gccaggcatcagccggtacgcatcgtcaccctcgactggagccgccaggccatcgcacca
ttgcatccggtctatctggcggcatgggaagaactggtggccggggatgaaggtgtaccg
ccgaccttcctcgaaccggccaccctgccggacccggtcccggccaacgctcccgcgctg
tcgctcccgctgctctgtccggcgccggacctggagagtgccgccgtgcagagcgcacag
atcgtgctgcgctggctggagcagggcaagggcgagattgccatcgtcgcccaggaccgg
gtcaccgcgcgccgtctgcgggccctgctggaacgcgccgaagtggccgtggccgacgag
accggctggaagctctccaccacccgcgccgctgccgcgctggcggcctggaacgatctg
gtgtcggcccgtggcgagaccaatgccctgctggacctgctgaagtcgcccttcgtcttt
cccgatgacccggatcgcgccgaccgcgtcatgcgcatcgaagcccgcctgcgtcgtgcc
aatatcgccggtgactggcaagccctgcaatcggccttcgcacaggcggaggatggcgcc
gacctcgcctgcatcaccttgctggcccgccaggccgcccgcttcggcggtcgcaaaacc
ctggcgcaatggtgtgacacccagcgcgccctgtgtcaggccctgggcatggagaacgca
ttgcgcgacgatggcgcgggcgaacaatgcctcctgatgctggacgacatcgccgccggg
caaggtggcctggaagacagtttctcctttgccgaatggcgtgcactgctgaacctgcgc
ctcgatgccacttcctacatgccgcccatcaaggaccggcgggtggtgatgctgccgctc
aatggcgcccgcctgcgtcgcttcgacgcggtactggtgatcggtgccgatgccgcgcac
ctgccatcgccaccgcaggaaacgctgttcttttccaatgccgtgcggcgcgaactgaac
ctggtcacgcgcgccgaacgccagcgccagcaactgcgcgacctgaccgaactgctgtgc
gtgaaccacgaggtggtgctgtgctggcagacccatcaggatggcgaacccaacccggtc
agcccctggatacagcgcctggaactgaagttggcgcagcagggcatggcgccgttgcgc
aatgtgcattggcaggcgccgctgcgcaagctgcaggcgcagcgttcatccatgccggca
ccgagcgcgccggagctgttgccgtccagcctgtcggccagcggcttcggcagtttcctg
gcctgcccctaccagttcttcgcggcgcgcatgttgcgcgtggccgtgatggacgagctc
tccgacctgcccgaaaaacgcgactacggcagttggttgcatgaaatcctgcatcgctat
cacgcccacctgcgtgagcaggccacgccgctggcggcacgtcccgctctgctggccagc
atctcggaagaggtgttccagcgcgagatgcagcgtcaccctgcggcgctggccttccac
gcccgctggcagaaggtgatgccggcctacctgctctgggccaatgaacgcgaggccgat
ggctggcagttcgtcttcggtgagcagtcgcagtcgcaagcgctgtcctggcaggatggc
ggcatcgaactgtatggtcgcctggatcgggtggatcagaatgcgcagggcgagcgcgcc
ctgctggactacaagacccgcagcgtcgccagcctcaggcagaaggtcaaggaagaggat
gatcatcaactggccttctacggcctgctggccggcggcgcaatagaacacgcccattac
gtggccctcgaactgggcagcgacaagaagaccggcgacgccgccgcccccgatttcctc
cgcaagcaagacatgctcaagcaacagatcaccaccaccctgcatcaggtggcgcagggt
gcgccgctaccggccaatggcatcgaatcggtgtgccagtactgcgatatgcgcggcctc
tgccgcaagggagcctggctgtga
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