Herbaspirillum frisingense: G5S34_09335
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Entry
G5S34_09335 CDS
T06761
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hfr
Herbaspirillum frisingense
Brite
KEGG Orthology (KO) [BR:
hfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hfr03032
]
G5S34_09335
03400 DNA repair and recombination proteins [BR:
hfr03400
]
G5S34_09335
Enzymes [BR:
hfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
G5S34_09335
DNA replication proteins [BR:
hfr03032
]
Prokaryotic type
DNA Topoisomerases
G5S34_09335
DNA repair and recombination proteins [BR:
hfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
G5S34_09335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QNB06953
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Position
complement(2082257..2083447)
Genome browser
AA seq
396 aa
AA seq
DB search
MDRNAAPPADARHQDEAADIARANQLRYVNDEMPGIRRSRHGKGFAYHDAQGQLIRDADV
LARLRSLAIPPAWEEVWISPHHNGHIQATGRDARGRKQYRYHARWRLVRDDAKYLRMISF
ARALPTIRKVVEQDLQRPGLNRQKVLAAVVHLLQSTFMRVGNDEYARQNKSFGLTTLRHR
HVRVDGSDVLFRFRGKSGVQHDIKLHDPYVARIIRKMRELPGQELFQYVDDDGERHCIDS
GDVNAYLREAAGEDFSAKDFRTWAGTVLATLALQAFERVDSQAQAKQNVVRAIENVARRL
GNTPSICRKCYVHPAVIESYLDGSFAELLEERVQAELVQELHDLSPEEAAVLALLQQRLH
EADDSPARRPARKKSVNRAGSTARKAAHGSAHAAPA
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcaatgctgctccccccgccgatgcccgtcaccaggacgaggccgccgatatc
gcccgtgccaaccagctgcgctacgtcaacgacgagatgccgggcatccgccgcagccgc
catggcaagggctttgcctatcacgatgcgcagggccaactgatacgcgatgccgacgtg
ctggcgcgcttgaggtcgctggccattccaccggcctgggaagaggtgtggatcagcccc
catcacaatggccatatccaggccaccgggcgcgatgcgcgcggtcgcaagcagtaccgc
tatcacgcccgctggcgcctggtgcgcgacgacgccaaatacctgcgcatgatcagtttc
gcccgcgccctgcccaccatccgcaaggtggtggagcaggatctgcagcggcccggcctg
aatcggcaaaaggtattggcggcggtggtgcatctgctgcagagcaccttcatgcgggtc
ggtaacgacgaatacgcgcgccagaacaagtctttcgggctgaccacgctgcgccatcgc
catgtgcgggtcgatggcagcgatgtgctgttccgcttccgtggcaagagcggggtgcag
catgacatcaagctgcatgatccctatgtggcgcgcatcatccgcaagatgcgcgagttg
ccggggcaggagctgttccagtacgtggatgacgacggtgagcggcactgcatcgattcc
ggcgacgtcaatgcctatctgcgcgaggcggcgggcgaggatttcagcgccaaggatttc
cgcacctgggccggtacggtactggctacgctggcgctgcaggccttcgagcgggtggac
tcgcaggcccaggccaagcagaacgtggtccgcgccatcgagaacgtggcacgccggctg
ggcaatacgccgtcgatctgtcgcaaatgctatgtgcacccggcggtcatcgagagctat
ctcgatggcagtttcgccgagttgctggaagaacgcgtgcaggccgaactggtgcaggag
ctgcacgacctgtcgccggaagaggcggcggtgctggcattgctgcaacagcgcctgcac
gaggccgatgattcccctgcacgccggccggcgcgcaaaaaatctgtcaaccgggcgggc
agcactgcgcgcaaggctgcacacggcagcgcgcacgctgcaccagcctga
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