Herbaspirillum frisingense: G5S34_11020
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Entry
G5S34_11020 CDS
T06761
Symbol
kdsB
Name
(GenBank) 3-deoxy-manno-octulosonate cytidylyltransferase
KO
K00979
3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:
2.7.7.38
]
K03270
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:
3.1.3.45
]
Organism
hfr
Herbaspirillum frisingense
Pathway
hfr00541
Biosynthesis of various nucleotide sugars
hfr01100
Metabolic pathways
hfr01250
Biosynthesis of nucleotide sugars
Module
hfr_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
hfr00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
G5S34_11020 (kdsB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
hfr01005
]
G5S34_11020 (kdsB)
Enzymes [BR:
hfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.38 3-deoxy-manno-octulosonate cytidylyltransferase
G5S34_11020 (kdsB)
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.45 3-deoxy-manno-octulosonate-8-phosphatase
G5S34_11020 (kdsB)
Lipopolysaccharide biosynthesis proteins [BR:
hfr01005
]
Lipid A
G5S34_11020 (kdsB)
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Gene cluster
GFIT
Motif
Pfam:
CTP_transf_3
NTP_transf_3
Hydrolase_3
Hydrolase
HAD_2
FANC_SAP
Hydrolase_6
Motif
Other DBs
NCBI-ProteinID:
QNB07244
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Position
complement(2432365..2433645)
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AA seq
426 aa
AA seq
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MRCIAVIPARFGSSRLPGKPLADILGKPMIQHVYERVKTLEELADVVVATDDERIVAAVT
AFGGKAVLTSPDHPSGTDRLREVMQHHPADLYLNVQGDEPLVNPAHLRSLLQAMLGAPQV
QVGTLCHPISASEAENPNTVKVVRNRAGDALYFSRARIPFERESTGKTRYFKHIGVYAYR
AELLAAFPELPASELERAEMLEQLRIMDAGWQIRVIEVDHAATGVDTPACLERVRALMAG
LPDPALKAGSLADLKLVITDIDGVLTDGGIWYDDSGECLKRFHVRDGMGIKMLQEAGVNV
AVISGRDSATLRRRLADLGITVFHLGAKDKAAACQDIMAQYGVGREATAMIGDDSIDLPG
FAACDWPVAVGDAADYVKRHARIVLAKPGGQGAFREFSDSVLNAQNRSAIYDSVAGYAQA
MSRMTQ
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgcgctgtatcgctgtcattccggcacgctttggctccagccgcctgcccggcaaaccg
ctggccgacatcctgggcaagcccatgatccagcatgtctacgaacgcgtgaagacgctg
gaagaactggccgatgtggtggtggccaccgacgatgaacgcatcgtggcggcggtcacc
gccttcggtggcaaggccgtcctgacctcgcctgaccacccttccggtaccgatcgtctg
cgcgaggtcatgcaacaccatccggccgacctctatctcaacgtgcaaggtgacgaaccg
ctggtcaatccggcgcacctgcgcagcctgctgcaagccatgctgggcgcaccgcaggtg
caggtcggcaccctttgtcatccgatcagtgccagcgaggcggagaaccccaataccgtc
aaggtcgtacgcaatcgtgcgggtgacgcgctgtatttcagccgcgcacgcattcccttt
gaacgcgagtccaccggcaagacgcgctacttcaagcacatcggggtctacgcctatcgc
gccgagctgctggcggctttccccgaattgcccgccagcgagctggagcgcgcggaaatg
ctggaacagctgcgcatcatggatgccggctggcagatccgcgtcatcgaagtcgatcac
gccgccaccggcgtggatacgccggcctgcctggagcgcgtacgtgccctgatggctggc
ctgcccgatccggcgctcaaagccggcagcctggcggatctgaagctggtgatcaccgat
atcgacggagttctcaccgacggcggcatctggtacgacgacagcggcgaatgcctcaag
cgcttccacgtgcgtgatggcatgggcatcaagatgctgcaggaagccggcgtcaacgtg
gccgtcatctccggccgcgattcggccacgctgcgccgtcggctggccgacctgggcatc
accgtattccacctcggcgccaaggacaaggccgccgcctgccaggacatcatggcgcaa
tacggcgtcggtcgcgaagccacggccatgatcggcgatgacagcatcgacctgcccggc
ttcgccgcctgcgactggccggtggccgtcggcgacgcagctgactacgtcaagcgccat
gcccgcatcgtgctggccaagcccggcggccaaggtgctttccgggaattttccgacagt
gtattgaacgcccagaaccgttccgccatctatgacagcgttgctggttatgcccaggcc
atgagccgcatgacgcagtga
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