Herbaspirillum frisingense: G5S34_15820
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Entry
G5S34_15820 CDS
T06761
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
hfr
Herbaspirillum frisingense
Brite
KEGG Orthology (KO) [BR:
hfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hfr03009
]
G5S34_15820 (rlmD)
Enzymes [BR:
hfr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
G5S34_15820 (rlmD)
Ribosome biogenesis [BR:
hfr03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
G5S34_15820 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
RrnaAD
TRM5-TYW2_MTfase
TRAM
Methyltransf_25
MTS
Methyltrans_SAM
Methyltransf_15
Cons_hypoth95
PCMT
Methyltransf_32
Methyltr_RsmB-F
UPF0020
Motif
Other DBs
NCBI-ProteinID:
QNB08081
LinkDB
All DBs
Position
complement(3503263..3504624)
Genome browser
AA seq
453 aa
AA seq
DB search
MQQDIIIEIKSLDMDGRGVGHLENEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGEM
TALHRESSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRP
IYGPTWGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLREL
VAALTIRDRMPQIELAVGEGDDGNKVTVLVLRIMEALAPADEVLLKAFADQYRIEWWLQT
KGPDTAAPYYPAQSKLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDR
VADLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKP
EDFVALGKFDRMLIDPPREGAMEVCKALVELPPEQQHLKPRRIVYVSCNPATLARDAGML
VHLGGYSLKYAGVVNMFPHTAHVESIAVFDLPE
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaagacatcatcattgaaatcaagtcgctcgatatggacgggcgcggcgttggt
cacctcgaaaacgaggatggcacgcaaggcaaggtcatcttcgtcgaaggtgcgctgccc
ggcgagcgggtcagtttccagtcctatcgcaagaaaccgaagtgggaagccggcgagatg
accgcgctgcaccgtgagtcctcgctgcgggtcaagccgcgctgcgactattttggtacg
tgcggtggctgcgccatgcagcatctggagccttcggcccaggtcgccatgaagcagcgc
gtgctggaagacaatctctggcatctgggcaagaccaaggccgaggtcatgttgcggccc
atctatggtccgacctggggttaccgttaccgcgcccgtatctcggtgcgccatgtggcc
aagaagggcggggtgctggtgggcttccacgaaaagcgctcctccttcatcgccgatatg
aagacctgcgagatcctgccccccaatgtctcggccatgctggtgccgctgcgcgagctg
gtggccgcgctgaccatccgcgatcgcatgccgcagatcgaactggcggtgggcgagggt
gatgatggcaacaaggtcaccgtactggtgttgcgcatcatggaggccctggccccggct
gacgaggtcttgctgaaggccttcgccgaccagtaccggatcgaatggtggttgcagacc
aaggggccggacacggccgcgccgtactacccggcccagtcaaagttgcagtacacgctg
ccggaattcggcatccgcatgcccttcaagcctaccgatttcacccaggtcaaccatcag
atcaaccgcgtgctggtggcacgcgcgctgcggctgctggatgtacagccgcaagaccgc
gtagccgacctgttctgtgggctgggcaactttacgttgcccatcgccacgctggcgcgt
gaagtagtgggtatcgagggcagcacggccttgaccgagcgcgccctggacaatgccaag
gtcaatggcgtggatgccaagaccagcttctattgccgcaacctcttcgaggccaagccc
gaggatttcgtggccctgggcaagttcgaccgcatgctgatcgatccgccgcgcgaaggt
gccatggaagtctgcaaggccctggtggagttgccgccggagcaacagcacctcaagccc
aggcgtatcgtctacgtctcctgcaatcccgccaccctggcgcgcgatgcgggaatgctg
gtccatctgggcggttattcactcaagtatgcgggcgtggtgaacatgttcccgcatacc
gcccacgtcgagtcgatcgcggtgttcgacctgccggagtaa
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