Herbaspirillum frisingense: G5S34_16685
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Entry
G5S34_16685 CDS
T06761
Symbol
xth
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
hfr
Herbaspirillum frisingense
Pathway
hfr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
G5S34_16685 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hfr03400
]
G5S34_16685 (xth)
Enzymes [BR:
hfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
G5S34_16685 (xth)
DNA repair and recombination proteins [BR:
hfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
G5S34_16685 (xth)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
DUF8358
Motif
Other DBs
NCBI-ProteinID:
QNB08234
LinkDB
All DBs
Position
3685540..3686307
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AA seq
255 aa
AA seq
DB search
MKIATWNVNSLKVRLPQVLKWLEENPVDVLCLQETKLTDDKFPAAEIAAAGYLVEFSGQK
TYNGVAILSRHPMSDVVKNNPLFPDEQQRIIAATIEGVRYVCAYIPNGQSLESEKYPYKL
NWLAALHEWLAQEKAKNPRLALLGDYNIAPEDRDVHDPVAWQGQVLVSEPEREAFRRLQA
LGLTDSYRLFEQPEKMYSWWDYRQMGFRLNRGLRIDHILLSEELLPRCTACVIDKVPRKW
EQPSDHAPVIATLAD
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcgccacctggaacgtcaactccctcaaggtccgcctgccgcaggtcctgaaa
tggctggaagaaaatccggtcgacgtgctctgcctgcaggaaaccaagctcaccgacgac
aagtttcccgccgccgaaatcgccgccgccggttacctggtcgaattctcgggccagaag
acctataacggcgtggccatcctgtcgcgccatccgatgagtgacgtggtcaagaacaac
cccttgttccccgacgagcagcagcgcatcatcgccgccaccatcgaaggtgtgcgctat
gtctgcgcctatattcccaacgggcagtcgctggagtccgaaaagtatccctacaagctg
aactggctggcggcgctgcacgagtggctggcgcaagaaaaggcgaagaacccgcgcctg
gcgctgctgggcgactacaacatcgcgcccgaagaccgcgatgtgcacgatccggtggcc
tggcaaggtcaggtgctggtgtcggagccggaacgcgaggccttccgcaggctgcaggcg
ctgggactgaccgactcctaccggctgttcgaacagccggagaagatgtatagctggtgg
gattaccggcagatgggtttccgcctcaatcgtggcctgcgcatcgaccacatcctgctg
tccgaagaactgctgccgcgttgtaccgcctgcgtcatcgacaaggtgccgcgcaagtgg
gagcagccttccgaccacgcgccggtgattgcgaccctggccgactga
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