Herbaspirillum frisingense: G5S34_18780
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Entry
G5S34_18780 CDS
T06761
Name
(GenBank) transglycosylase SLT domain-containing protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
hfr
Herbaspirillum frisingense
Brite
KEGG Orthology (KO) [BR:
hfr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
hfr01011
]
G5S34_18780
Enzymes [BR:
hfr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
G5S34_18780
Peptidoglycan biosynthesis and degradation proteins [BR:
hfr01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
G5S34_18780
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SLT
LysM
LysM1_NFP_LYK
Motif
Other DBs
NCBI-ProteinID:
QNB08596
LinkDB
All DBs
Position
4113455..4114987
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AA seq
510 aa
AA seq
DB search
MQRTLKQLAIAALFCAGTPLLSYANDISIYPAPFNAINPELAGNALPGMNDIDIWTRIRK
GFGIPDLDNALVESQTQWYSSRPDYIQRTTVRASRYLFHVVQELEKRGMPTELALLPFIE
SAFNPEALSTAKAAGMWQFIPSTGRDYNLKQNMFTDERRDVLASTDAALTYLQKLYGMFG
DWQLALAAYNWGEGSVQRAVNRNLAAGLPIDFNTLSAQMPNETRNYVPKLQAVKNIIANP
ASFDIALPKVDNQPYFVTIGKTRNIDVKVAAQLAELSLDEFKALNPQFNRPVIIGGEDTK
ILLPESNAEKFKANMSKWTQAFSTWTAHTVSSARERIETIASKFGTTPEVIRSVNQIPPR
MVLKAGSTILVPKTEETAALDTDLTPEIADNARLAIAPDAPETRRIYVKAGKRDTLAGIA
GRYRVSVAQIKEWNGLKRDTLAAGQSLQLHVPNVAAHAAPTRVAANHRAAPVRRQVAAAK
APVRKAAPAPARKVAGKPLTLASGNGARKQ
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtactttgaaacaacttgcaattgccgccctgttctgcgctggcaccccgctg
ctctcctacgccaacgatatctcgatctaccccgctcccttcaatgcgatcaatcccgaa
ctggccggcaatgccctgccggggatgaacgacatcgacatctggacacgcattcgcaag
ggcttcgggattcctgatctggacaatgcgctggtggagagccagacccagtggtacagc
tcccgtcccgactacatccagcgcaccacggtgcgcgcttcgcgctacctgttccatgtg
gtgcaggaactggaaaagcgcggcatgccgaccgaactggcgctgctgcccttcatcgaa
tcggccttcaatccggaggcactgtctaccgccaaggcggccggcatgtggcagttcatc
ccctccaccgggcgcgactacaacctcaagcagaacatgttcaccgacgagcgccgcgac
gtgctggcctcgaccgatgcggcgctgacctacctgcagaagctctacggcatgtttggc
gactggcaactggcactggccgcctataactggggcgaaggctcggtgcagcgcgccgtg
aaccgcaacctggccgccggcctgccgatcgacttcaacaccctgtcggcgcagatgccc
aatgagacccgcaattacgtgcccaagctgcaggcggtcaagaacatcatcgccaacccg
gccagcttcgacatcgccctgcccaaggtcgataaccagccctacttcgtgaccatcggc
aagacccgcaacatcgatgtcaaggtcgccgcccagctggccgaactgtcgctggacgaa
ttcaaggcgctcaatccgcagttcaaccgcccggtcatcatcggcggcgaagacaccaag
atcctcctgccggaaagcaatgccgagaagttcaaggccaacatgtccaagtggacgcag
gctttctccacctggaccgcacacaccgtctccagcgcccgcgagcgcatcgagaccatc
gccagcaagttcggcacgacccctgaagtgatccgcagcgtcaaccagattccgccgcgc
atggttctcaaggccggctccaccatcctcgtgcccaagaccgaggaaaccgctgcgctc
gataccgacctgaccccggaaatcgccgacaacgcccgcctggccattgctccggatgcg
ccggaaacccgccgcatctacgtcaaggccggcaagcgcgataccctggccggcatcgcc
ggtcgctatcgtgtgagcgtggcacagatcaaggaatggaatggcttgaagcgcgacacc
ctggccgccggccagagcctgcagttgcacgtccccaatgtggccgcgcatgccgcgccc
acacgggtcgccgccaatcatcgtgctgcaccggtgcgccgccaggtcgctgccgccaag
gcaccggtacgcaaggccgccccggcgccagcccgcaaggtggccggcaagccgctcacc
ctggcctcgggcaacggcgcacgcaagcaataa
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