Candidatus Hydrogenisulfobacillus filiaventi: R50_1368
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Entry
R50_1368 CDS
T08923
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hfv
Candidatus Hydrogenisulfobacillus filiaventi
Pathway
hfv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hfv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R50_1368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hfv03019
]
R50_1368
03009 Ribosome biogenesis [BR:
hfv03009
]
R50_1368
Enzymes [BR:
hfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R50_1368
Messenger RNA biogenesis [BR:
hfv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R50_1368
Ribosome biogenesis [BR:
hfv03009
]
Prokaryotic type
rRNA helicases
R50_1368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Cas3-like_C_2
CMS1
WSD
UBA_NBR1_C
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
CAB1128874
UniProt:
A0A6F8ZG09
LinkDB
All DBs
Position
1:complement(1276321..1277958)
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AA seq
545 aa
AA seq
DB search
MANETDRIGQNGLEVGNGEEHKSGTTFREMGISAPVLRALEEMGFEEPSPIQLASIPLIR
AGRDLIGQAQTGTGKTAAFGIPIVEGLDHRSHKVQALVLTPTRELAIQVAEEITRIGRYA
GVKVVPIYGGQSYDRQIRALEHGSQVAIGTPGRVLDHIRRGTLNLSAVKVLVLDEADEML
DMGFIEDVEEILNNVPAERQTLLFSATVPDPVARLARRYLNNPEHINISPERVTVPQIDQ
IYYEVREHEKVDALSRILDMEGAERTIIFCRTKKRVDELTEALQARGYGAEALHGDLNQV
QRNRVMKRFREGGSEILVATDVAARGLDIENVTHVINYDLPQDSETYVHRIGRTGRAGRS
GTAISLIHPREFRQLRQMERILRIRLQRRPLPTPEDVAEKQREILKNRLAEEVERGVLPE
YQELVMELAQSYDSVDIAAAALRLMNEKGREAEAENPYGDTGAEPGMVRLFLNMGRADRV
TPSDIVRGLAEGSGISGSVIGLIDIYDRFTFVEMPKAAAQKVLASLESIAIRGRSVNMEP
ARPRS
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
ttggcgaacgagacagatcggatcggacagaacgggctcgaggtcggaaacggggaggag
cacaagagcgggaccaccttccgggagatgggcatctccgccccggtgctgcgggcgctg
gaggagatgggctttgaggagccctcccccattcagctggcgtccattcctctcatccgc
gcggggcgcgacctcatcgggcaggcccagaccggtaccggcaagaccgcggccttcggt
atccccatcgtggaggggcttgaccaccgctcccacaaggtgcaggcgctggtgctcacc
cccacccgggaactggccatccaggtggcggaggagatcacccggattggacgttatgcc
ggggtgaaggtggtgcccatttacggcgggcagtcgtacgaccgtcagatccgggccctg
gagcacggatcccaggtcgcgatcggcaccccggggcgggtcctggaccacatccgccgc
gggaccctgaacctgtcggcggtaaaggtgctggtgctggacgaggccgacgagatgctg
gatatgggcttcatcgaggatgtggaggagatcctcaacaacgtccccgctgagcgccag
accctgcttttctcggccacggtgccggacccggtggcccggctggcgcggcgctacctg
aacaatccggagcacatcaacatcagccccgaacgggtgacggtcccccagatcgatcag
atctactacgaggtgcgcgagcacgagaaggtggacgccttaagccgcatcctggacatg
gagggcgcggaacggaccatcatcttctgccgtaccaagaagcgggtggacgagctgacc
gaggccctgcaggcccgcggttacggggccgaggccctgcacggtgacctcaaccaggtg
cagcgcaaccgcgtgatgaagcggttccgggagggtggcagcgagatcctggttgccacc
gacgtggcggcccggggtctggacatcgagaacgtgacccacgtcatcaactatgacctc
cctcaggactccgagacctacgtccaccgcatcgggcgtacgggacgggccgggcggagc
ggaaccgccatttccctcatccatccccgggagttccggcagctgcggcagatggaacgc
atcctgcgcatccgcctgcagcgacggccgttacccacgcccgaggatgtggccgaaaag
cagcgcgagatcctgaagaaccgcctggcggaggaagtggagcggggggtgctgccggaa
taccaggaactggtgatggagctggcccagtcctacgattccgtcgacatcgccgccgcc
gccctgcgcctgatgaacgagaagggccgcgaggcggaagccgagaacccgtacggcgac
accggggccgagcccggcatggtgcgactgttcctcaacatggggcgggccgaccgggta
accccctccgatatcgtgcgcgggctggcggaagggtccggcatctccggcagtgtgatc
gggctcattgacatctacgaccgctttacgtttgtggagatgcccaaggcggccgcccag
aaggtgctggcctcgctggagtccatcgccatccgcgggcggtccgtcaacatggaaccg
gcgcgtccgcgcagctaa
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