Candidatus Hydrogenisulfobacillus filiaventi: R50_2623
Help
Entry
R50_2623 CDS
T08923
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hfv
Candidatus Hydrogenisulfobacillus filiaventi
Pathway
hfv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R50_2623 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hfv03400
]
R50_2623 (mfd)
Enzymes [BR:
hfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R50_2623 (mfd)
DNA repair and recombination proteins [BR:
hfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R50_2623 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
Cas3-like_C_2
UB2H
IstB_IS21
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CAB1130115
UniProt:
A0A6F8ZKX2
LinkDB
All DBs
Position
1:complement(2402935..2406462)
Genome browser
AA seq
1175 aa
AA seq
DB search
MTEIPSLAGLLDLWAAYPAYRTFREELLARGRGEASGLSGSLPAFLTAALARDLALPVLV
VTAGSQEARRWQAQLEVLLPGRPCFFFPPRPPAWGEVSAESGEWAAMRLAALDAVAGAGS
AILVAPVQAARELLLPAGAPALELTAGQEVEPQVVAARLDALGYRTAPAVEAPGQMSRRG
GILDVWPPGADPVRIEWWDVVIESLRRFDPVTQTSVERVDRVRVAPAREAVLEGERLEAV
RRRIAGELDTARTALLATGRRSQAEALEERYSRVLRELEEGNLAGAAAQRLAAACGPGVV
LSRRFREPPLVVYDDWPRIAEAVRGQAALEREEAAARLERGEILPVEAETSLGDPEAWAE
ALDGRARLYLSLLPHARTQGGAVLALAGRPAPRVHGQPDRFAAEVGRLRKARQRVVLAVR
DPEQAQVLGRELLDRGINPRPGLGVPGEVGFLLGLLGEGFWLPELGLVVLAQGEISGREV
QPLPAARRRPGGPAVKLTDLKPGDYVVHVTHGIGRFLGLATLEVDGRHKEYLHIAYAGQD
TLYVPVEQVGLVQKYVGVEGQEPRLSRMGGGEWARVKERVRRSVRELAEELIRLYARRQT
EAGFAFPPDTPWQADFEAAFPYEETPDQLSALRAIKADMEAPRPMDRLLCGDVGYGKTEV
ALRAAFKAVLAGKQVAFLVPTTLLAEQHYATAKSRLAGYPVTVEALSRLRSPREQRRILE
GLASGRVDLVIGTHRLLAKDVRFRDLGLLIVDEEHRFGVAHKERIKALKANVDVLTLSAT
PIPRTLHMALVGIRDMSVIETPPEDRLPVETVVLPYQDEVVREAIRREVDRGGQVFYVHN
RIHAIDRIVARLERLLPGLRIGVVHGQVGEDQMEEVMARFVAHEYDVLVATAIIESGLDI
PNANTLIVEDADQLGLAQLYQLRGRVGRSARLAYAFFTYRPERVLTPAAQRRLETIREFT
ELGSGYQIALRDLEIRGAGNLLGAEQHGHIAAVGFDLYTELLAEAVRELKGEAAPAPVPD
PQLDLTVEAYLPEGYIPEVGQKIGWYKRLAQLQTPEEVDQVAAELADRYGPLPPPAHRLL
QVARIRTLARALRLAAVSERPDRVVLKATPQSPLQPDALRQLGQVFSGRLLPGRADQAEL
AIRLSRPARPGEAADVAETALDILKGVWAGALSQG
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagatcccgagtctggccggcttgttggacctgtgggcagcatatcccgcctac
cgcaccttccgggaggagctcctggcccggggccggggggaggcctcgggcctgtccggg
tccctgccggcattcctcaccgccgccctggcccgggacctggcactgccggtcctggtg
gtgaccgccggttcccaggaggcccgccgctggcaagcccagctggaggtgctgctgccc
ggccgtccctgcttcttcttcccgccccgcccgcctgcttggggggaggtcagcgccgag
agcggggaatgggccgccatgcgcctggcggctctggacgcggtggcaggggccgggtcc
gccattctggtggcacccgtgcaggccgcccgggagctgttgctgccggccggggccccc
gcgctggagctgacggcagggcaggaggtggagccgcaggtggtggcggcgcgcctggat
gcgctcggctaccggacggcgccggcagtggaggcgcccggccagatgagccgccggggc
ggcatcctcgatgtttggccgccgggggcggatccggtgcgcattgaatggtgggacgtg
gtgatcgagtccctgcgccgcttcgatccggtcactcagaccagcgtggagcgggtggac
cgggtgcgggtggccccggcccgggaggcggtgctggagggggagcgcctggaggcggtg
cgccggcggattgccggggagctggacaccgcgcggaccgcgctgctggccaccggccgg
cgcagccaggctgaggccctggaggagcggtacagccgggtgctgcgggagctggaggaa
gggaacctggccggggccgccgcccagcgcctggctgcggcctgcggtccgggggtggtc
ctttcccggcgtttccgggagcccccgctggtcgtctacgatgactggccccgcatcgcg
gaggcggtgcgggggcaggcggccctggagcgggaagaggcggcggcccgcctggagcgg
ggggagatcctgcccgtggaggcggagaccagcctgggggaccccgaggcctgggcggag
gccctggacgggcgggcgcgcctgtacctgtccctgctgccccatgcccgcacccagggc
ggggcggtgctggccctggccggccgcccggccccccgcgtgcatgggcagcccgaccgc
tttgcagccgaggtgggccgcctgcgcaaggcccggcagcgggtggtgctggcggtacgg
gacccggaacaggcgcaggtgctgggccgcgagctgctggaccggggcatcaacccgcgc
ccgggactgggggtgccgggcgaagtgggattcctgctggggctcctgggcgagggcttc
tggctgccggaactggggctggtggtgctggctcagggggagatcagcggccgggaggtg
cagccccttccggccgcccgccggcggccgggggggccggcggtcaagttgaccgacctc
aagcccggggactacgtggtgcacgtcacccatggcatcggccggttcctgggcctggcc
accctggaggtggacggacgccacaaggagtatctgcacatcgcctacgccgggcaggac
accctgtacgtgccggtggagcaggtggggctggtccagaagtatgtgggggtggagggg
caggagcctcgcctctcccgcatgggcggcggggaatgggcccgggtcaaggagcgggtg
cggcggtcggtgcgggaactggcggaggagctgatccgcctgtacgcccgccgtcagacc
gaggccggcttcgcctttccgccggacaccccctggcaggcggacttcgaggcggccttc
ccctatgaggagacccccgaccagctctcggccttgcgggccatcaaggccgacatggag
gcgccgcggcccatggaccgcctgctctgcggcgacgtaggctacggcaagaccgaagtg
gccctgcgggctgcgttcaaggcggtgctggcggggaagcaggtggccttcctggtgccc
accaccctgctggccgagcagcactacgccaccgccaagagccgcctggccggctacccg
gtgacggtggaggcgctcagccgcctgcgcagcccgcgcgaacagcgccgcatcctggag
gggctggcctccggccgggtggacctggtcatcgggacccaccgcctgctggccaaggac
gtgcgcttccgggacctggggctgttgatcgtggacgaggagcaccgtttcggggtggcg
cacaaggagcgcatcaaggccttgaaggctaacgtggacgtgctgaccctgagcgccacc
cccatcccccgcaccctgcatatggccctggtcggcatccgggatatgagcgtaatcgaa
accccgcccgaggaccgtctgccggtggaaacggtggtgctgccctaccaggacgaggtg
gtgcgggaggccatccggcgggaggtggaccgcggcgggcaggtgttctacgtccacaac
cgcatccatgccatcgaccgcatcgtggcgcgcctggagcgcctgctgcccggcctgcgc
atcggggtggtgcacggccaggtgggggaggaccagatggaggaggtgatggcacggttt
gtggcccacgaatacgacgtgctggtggctaccgccatcatcgagtccggcctggacatc
cccaacgccaacaccttgatcgtggaggacgctgatcagctggggctggcgcagctctac
cagctgcgcgggcgggtggggcgttcggcgcggctggcgtacgccttcttcacctaccgg
ccggaacgggtgctcacccccgccgcccagcggcggctggagaccatccgcgagttcacc
gaactggggtccgggtatcagattgccctgcgggaccttgagatccggggtgccggcaac
ctcttgggggcggagcagcatggccatatcgcggcggtgggctttgacctctacaccgag
ctgctggcggaggcggtgcgggagctcaagggggaggcggcccccgccccggtgccggat
ccgcagctcgacctgaccgtggaggcctacctgcccgaagggtatatcccggaggtgggg
cagaagatcgggtggtacaagcgcctggcccagctgcagaccccggaggaggtggatcag
gtggcggcggagctggccgaccgctacgggcccctcccgccgccggcgcaccgcctgctg
caggtggcccgcatccgcacgctggcgcgggcgttgcggctggcagcggtgagcgaacgg
ccggaccgggtggtgctgaaggccaccccccagtccccgctgcagcccgacgccttgcgc
cagctgggtcaggttttcagcggccggctgctgccgggccgggccgatcaggcggagctg
gccatccggctcagccggccggcgcgccccggggaagcggcggacgtggccgaaacggca
ttggatatcctgaaaggagtgtgggcgggtgccctatcacaaggataa
DBGET
integrated database retrieval system
