Helicobacter gastrofelis: NHP190012_00670
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Entry
NHP190012_00670 CDS
T10844
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hga Helicobacter gastrofelis
Pathway
hga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NHP190012_00670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hga03019
]
NHP190012_00670
Messenger RNA biogenesis [BR:
hga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NHP190012_00670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
BCZ18425
UniProt:
A0ABM7SCI3
LinkDB
All DBs
Position
complement(66424..68442)
Genome browser
AA seq
672 aa
AA seq
DB search
MENNPFKDNPAEGNHKNNQNPQNHENPAQEVRENQESPQGGNAPQNNKRLHKNRFNNRIK
QGREAINNNPRMQEQSGVKNITKANERGNLGFHKELKQGVEANHKIHINHLNPHYKLDLN
VKARVKITPLGGLGEIGGNMMVLETLNQAIIIDVGMSFPSEDMYGVDILIPDFSYLHSIK
DKIVGVLITHAHEDHIGAVPYLFKEFQFPLYGTPLSLGMIGNKFDEHGLKKFKSYFKIVQ
KRQPIQIGEFVVEWIHITHSIIDASALAIQTKVGTIIHTGDFKIDHTPVDNIPTDLYRLA
HYGEQGVMLLLSDSTNSYKPGITPSESSVGPVFENLFKNAKGRVIMSTFSSNIHRVYQAI
QHALNHNRKVAVIGRSMEKNLDIARELGYIHLPSKTFIEAHEVEKHPDHEVFIVTTGSQG
ETMSALYRMATDEHRHISIKPSDLIIISAKAIPGNEASVSSILNLLMKKDAQVVHHAFDV
HVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVAKHKETAISCGIPEKNIYLMEDGDQVE
VNPNFMRKTKSIKSGKSYVDNTNNTSIAEKIVQERQEIASAGLLSAVLFISKEGQDLMPA
SKLTSLGIVNMQEERAFLKELHGSLSLHIKALRQDILGNHKYLDESVRNFLRKALFRHTK
KYPAIVSHVFVS
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacaatccctttaaagacaatccagcagagggcaatcacaaaaataaccaaaac
ccccaaaaccatgaaaaccccgcccaagaagtccgggagaatcaagaaagcccccaaggt
ggcaacgccccccaaaacaataaaaggcttcataaaaaccgctttaataaccgcatcaaa
caaggcagggaggcgatcaacaacaacccccgcatgcaagagcaaagcggggtgaaaaac
atcaccaaagccaacgagcggggtaatttgggctttcataaagaattaaaacagggcgtg
gaggcaaaccataaaatccacatcaaccacctaaacccccactacaaactagatttaaat
gtcaaggcacgggtgaaaatcacgccccttggcggtttaggcgagattgggggcaatatg
atggtgctagaaaccctaaaccaggctatcatcattgatgttgggatgagctttcctagc
gaggacatgtatggcgtggatattttgatccccgattttagctacctacacagcattaaa
gataaaatcgtgggcgttttaatcacccacgcccacgaggatcacatcggggcggtgccc
tatcttttcaaggaatttcaattccccctttatggcacgcctttaagtcttggcatgatt
ggcaataaatttgatgaacatgggctaaaaaaattcaaaagctactttaaaatcgtgcaa
aaacgccagccgatccaaatcggggagtttgtcgtggagtggatacacatcacccactcc
atcatagacgcaagtgccctagcgatccaaactaaggtggggaccatcatccacacgggc
gattttaagatcgaccacacccccgtagacaacatccccaccgacctttaccgcctagcg
cactatggggagcagggggtgatgctcttactcagtgatagcaccaactcttacaaaccg
ggcattacgcccagtgaaagcagtgtggggcccgtgtttgaaaacctctttaaaaacgcc
aaggggcgggtgatcatgagcaccttctcctccaacatccaccgcgtctaccaagccatc
caacacgccttaaaccataaccgcaaagtcgccgtgatcgggcgttcaatggagaaaaac
ctagacatcgctagagagctaggctacatccacctgccctcaaaaaccttcattgaggcg
cacgaggtggagaaacaccccgaccatgaggtgtttatcgtcacgaccggctcgcagggc
gaaaccatgagcgcgctttatcgcatggcaaccgatgagcaccgccacatcagcattaag
cctagcgatttgatcatcatttcggctaaggcgatcccgggcaatgaggcgagcgtgtcg
agcattttaaatttattaatgaaaaaggacgcgcaagtcgtgcaccacgcctttgatgtg
catgtgagcgggcacgccgcccaagaggagcagaaattaatgttgcgcctcatcaagccc
aaattctttttacccgtgcatggcgagtataaccatgtcgccaaacacaaggaaacggcg
atctcttgcggaatccctgaaaagaacatttacctaatggaggatggcgaccaagtggag
gtgaatcctaacttcatgcgcaagaccaagagcattaagagcggaaaaagctatgtggac
aacacgaacaacaccagtattgccgaaaaaatcgtgcaagagcgccaagaaatcgccagc
gctgggctactaagcgcggtgctcttcatctccaaagaggggcaggatttaatgcccgct
tctaagctcacaagccttggcatcgtaaacatgcaagaggagagggcgtttttaaaagag
ctgcacgggtcgctgagccttcacatcaaagccttgcgccaagacattttgggcaaccac
aaatacctagacgaaagcgtccgcaatttcttaagaaaagccttgtttaggcacaccaaa
aaatacccggcgattgtaagccatgtgtttgtgagctga
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