Helicobacter gastrofelis: NHP190012_14170
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Entry
NHP190012_14170 CDS
T10844
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta/beta' RpoB
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hga Helicobacter gastrofelis
Pathway
hga03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hga00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NHP190012_14170 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hga03021
]
NHP190012_14170 (rpoB)
03400 DNA repair and recombination proteins [BR:
hga03400
]
NHP190012_14170 (rpoB)
Enzymes [BR:
hga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NHP190012_14170 (rpoB)
Transcription machinery [BR:
hga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NHP190012_14170 (rpoB)
DNA repair and recombination proteins [BR:
hga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NHP190012_14170 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
TraD
Alpha_E2_glycop
Motif
Other DBs
NCBI-ProteinID:
BCZ19775
LinkDB
All DBs
Position
complement(1339706..1346686)
Genome browser
AA seq
2326 aa
AA seq
DB search
MEFDLKDEKGQVLLAASRKLTAKKAKEIRESGVEWVEYPTKILLSRYLAEPILDKNKETL
LDALTLLEQPKLDKLKEAGVKEFVIANDLALGHDASIIRSFSADNESLKSESQKLLKQSE
KVEDENALAAIRIYKVMRPGDPVTAEVAQQYVQQLFFDPERYDLTMVGRMKMNHKLHLKV
PNYVTVLTHEDIIETVKYLIKIKNGQGRIDDRDHLGNRRIRAVGELLANELHEGLMKMQK
TIKDKLTTMNTNLDALMPHDLVNSKMITSTILEFFMSGQLSQFMDQTNPLSEVTHKRRLS
ALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNELGFIEAPY
KKVIEGQVSGDVEYLTAIQEEGHVIAPASTALDAKGHIQEDLVETRVGGEIALNEKSKVT
LMDLSSRILVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLKAEAPIVGTGIESVIARD
SWGSVKAERRGVVDEVDSENIYIVEKDPEKGPHISSYLLQKNLRTNQNTCFNQVPIVKVG
DVVEEGQIIADGPSMDQGELALGKNIRVAFMPWNGYNFEDAIVVSEKITKDDVFTSVHIY
EKEIEARELKHGIEEFTADIPDVKEEEVAHLDNGGIVKIGTYVSAGMILVGKVSPKGEMK
STPEERLLRAIFGDKAGHVVNKSLYCPPSLEGVVIGVKIFTKKGYEKDARATSAYEEEKW
VLDDRHDKHFKMLDKEEALQISAIFSQEPLEEEVTLNDVAYPKGSKIPREVVESTNRFGL
ISLSKKFSKEVQERFEQIKLNILEQKKLLGQSHEKKLSILEKDDILPNGVIKQVKIYIAT
KRKLKVGDKMAGRHGNKGIVSNIVPIADMPYTADGEPIDIVLNPLGVPSRMNIGQILEVH
LGLVGKELGKQIQALLAEHTADMLKKLRAKMLEIAHVVNVHNHDLAKMLEKCSDEQLLEY
ARDWQNGVKFAIPVFEGISQEQFMELFKLAKIDLDGKTELFDGRTGEKMKERVNVGYMYM
LKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLKEMLT
VKSDDIKGRENAYRAIARGEHVGESEIPETFYVLTKELQSLALDVNIFNEEVDEFGMPKP
IVIKEDERPKDFSSFQLTLASPDKIREWSYGEVKKPETINYRTLKPERDGLFCMKIFGPT
KDYECLCGKYKKPRYKTIGTCEKCGVAITSSKVRSFRMGHIELATPVAHIWYVNSLPSRI
GTLLGIKMKDLERVLYYEAYIVKDPASACYDIEGTKPVLKYDILNEEQFQSIQRHNSDPD
FNAQMGGEVIKELLEELDLVALLEALKEEVKNTNSDAKKKKLVKRLKVVESFINSGNHPE
WMMLTALPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEIIVRNE
KRMLQEAVDALFDNGRNANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVI
VVGPNLNMDQCGLPKNMALELFKPHLLSKLEEKGFATTFKQAKRMIEQKTNEVWECLEEI
VEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQE
AITECKVLMLSSMNILLPASGKAVAVPSQDMVLGIYYLSLEKNGVLGEHKLFSSVAEVLM
AVDAKELDVHAKVRVLQERHILQTTAGRLVIKSILPDFVPTHLWNKVLKKKDIGALVDFV
YKESGIGQTAKFLDNLKNLGFKYATKAGISISMEDIITPANKVHMVEVAKGRVKDIQAQF
EGGHLSEQERYNKIIDIWTEVNDAMSQEMMAAIASDKQGFNSIYMMADSGARGSAAQIRQ
LSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTATAGYLTRK
LIDVAQNVKVVQEDCGTHEGIEITDITVGSELIEPLEERIFGRVLVEDIIDPLTNEVLLN
ADTMVDEEKAKRVVEAGIKSVTIRTPVTCKAQKGVCAKCYGLNLGEGKMVKPGEAVGVVA
AQSIGEPGTQLTLRTFHVGGTASRSQEEREILASNEGFVRFFNVKTYQNKEGKNIIVNRR
NAAILVVEPKIKAPFAGTLKIDSAHEEVVLSVSDGDKEAKFVLRKSDVAKPNELAGVSGK
IEGKIYLPYSNGHVVHEGGSIADIIKDGWNVPNRIPYASEIAVQDNDPITQNTLAKEKGV
VKFYNLVGDHLERARGIKAGDIVEEKGLFAVVADENDQEAIRHYIARNSLVQVDDNSPVK
ADTLLVKPSTESKNVIASWDPYNTPHHRRHCRRGALCGHCGGGERD
NT seq
6981 nt
NT seq
+upstream
nt +downstream
nt
ttggagtttgatttaaaggatgaaaaagggcaggtgcttttagccgccagccgcaaactc
accgctaaaaaagccaaggaaattagagaaagtggggttgagtgggtagaatatcccact
aaaattttactgagccgttacctagccgaacccattttagacaagaacaaagaaaccctt
ttagacgctttaaccctcttagaacaacccaaacttgacaaactcaaagaagcgggcgtg
aaagagtttgtcatcgccaatgacctagccctaggccatgacgcctccatcattagatcc
tttagtgctgacaacgagtcgcttaaaagcgaatcgcaaaaacttttgaaacaaagcgaa
aaagtggaggatgaaaacgctttggcggcgattcgcatttataaagtcatgcgcccgggc
gatcccgttacagccgaagtcgcccagcagtatgtgcaacaactcttctttgatcctgag
cgctacgatttgacaatggttgggcgcatgaaaatgaaccacaaattgcatttaaaggtg
cctaactatgttacggtgctcacccacgaggacatcattgagaccgtgaaatacctcatt
aaaatcaaaaacgggcaaggccgcattgacgatcgcgaccacttaggcaaccgccgtatc
cgcgccgtgggtgagcttttagccaatgagttgcacgagggcttgatgaaaatgcaaaag
accattaaagacaagctcaccaccatgaacaccaacctagatgcgctcatgccccacgac
ttggtgaattctaaaatgatcaccagcaccattttagagtttttcatgagcgggcaactc
tcccaattcatggaccaaaccaaccccttatctgaagttacccacaaacgccgtttatcc
gctttgggtgagggcggtttggtgaaagatcgcgtgggctttgaggcgcgcgatgtgcac
cccacgcactacgggcgcatttgccccattgaaaccccagaggggcaaaacatcgggctc
atcaataccctatccactttcacaagggtgaatgaactaggcttcattgaagccccttat
aaaaaagtgatagaagggcaggtgagcggggatgtggagtatctcaccgccattcaagag
gaggggcatgtcatcgcgcccgccagcaccgcactagacgccaaagggcatatccaagag
gacttggtagaaacgcgcgtgggtggggaaattgcgctcaatgaaaagagtaaagtaacc
cttatggatttaagctctagaatcttagtgggtgtggccgcctctttgatccccttttta
gagcatgacgatgccaaccgcgcgctgatggggacgaacatgcaacgccaagccgtgccc
ctgcttaaagccgaagcccccattgtgggcacgggcattgaaagcgtgattgccagggat
tcttgggggagcgtgaaggcggagcgtaggggcgttgtggatgaagtggattcagagaac
atctacatcgtggaaaaagaccctgagaagggaccgcacatcagctcttatttattgcaa
aaaaacctacgcaccaaccaaaacacctgctttaaccaagttcccatcgtgaaagtgggc
gatgtggtggaagaggggcaaatcatcgccgatggaccaagcatggatcaaggcgaacta
gccctaggtaaaaatatccgcgtggcgttcatgccctggaacggctacaactttgaagac
gcgatcgtggtgagcgaaaaaatcaccaaagacgatgtcttcacctccgtgcacatctat
gaaaaagagatcgaggctagggagcttaaacacgggattgaggaattcaccgccgatatc
cccgatgtcaaggaggaggaagtcgctcacttggataacggggggatcgttaaaattggg
acttatgtgagcgcagggatgatcttagtcggcaaggtttcgcccaagggtgaaatgaaa
agcacaccagaagagcgcttgctgcgtgccatttttggggacaaagccgggcatgtggtg
aataagtcgctttattgccctccttctttagagggcgtggtgatcggggtgaaaattttc
accaaaaaaggctatgaaaaggatgcacgcgccacaagtgcctatgaagaagaaaaatgg
gtgttagacgatcgccacgacaagcattttaaaatgctggataaagaagaagccctgcaa
atcagtgcgatcttctcccaagagcctttagaggaagaagttaccttaaacgatgttgcc
taccccaaagggagcaaaatccccagagaggtcgtggaaagcactaaccgctttggcttg
atctctttgtctaaaaagttcagcaaggaagtgcaagaacgcttcgagcaaatcaagctc
aacattttagagcaaaagaaacttctagggcaaagccacgagaaaaaactctctatccta
gaaaaagacgacattttacccaatggggtgattaagcaagtcaaaatttacatcgccacg
aagcgcaagctcaaagtgggggataaaatggcagggcggcacgggaataagggcattgtg
tctaatatcgtgcccattgccgacatgccctacactgccgatggcgagcccatcgacatt
gtgctaaaccccttaggcgtgccaagccgcatgaacatcgggcagattttagaagtgcat
ttaggacttgtaggtaaggaattaggcaaacaaatccaagcccttttggcagagcacact
gccgacatgctgaaaaaactgcgcgctaaaatgctagagattgcccatgtggtgaatgtc
cataaccacgacttggcgaaaatgcttgaaaaatgtagcgatgagcaacttttagaatac
gcccgcgattggcaaaatggtgtgaaatttgccatccccgtctttgagggcatcagccaa
gagcaattcatggagcttttcaagcttgccaaaatcgacctagatggcaaaaccgagctg
ttcgacgggcgcacgggcgagaaaatgaaagagcgcgtcaatgtgggctacatgtatatg
ttaaaactccaccacctcgtggatgaaaaggtgcacgccagaagcacgggaccctactct
ttggtaacccaccaacctgtgggcgggaaggcactttttggggggcaacgctttggggaa
atggaggtgtgggctttggaggcttatggggcggcgcacacgcttaaagaaatgctcacg
gtgaaatcggacgatattaaaggtagggagaacgcttatagagcgatcgctagaggcgag
catgtgggcgagagcgaaatccccgaaaccttttatgtgctcaccaaagagttgcaatct
ttggctttggatgtgaatatctttaatgaggaagtggatgaatttggcatgccaaaaccc
attgtcattaaagaggacgagcgccccaaagactttagctcgttccagctcactttagcc
agcccggataaaatccgcgagtggagctatggggaggtgaaaaagccagagaccatcaac
taccgcacgctcaaacccgagagggacgggctcttttgtatgaaaatctttggacccacg
aaagattacgagtgcctgtgtggcaagtataagaaaccccgctataaaacgattggcact
tgcgaaaaatgcggcgtggcgatcaccagctctaaagtgcgtagttttagaatggggcac
attgagctagccacccctgtggcgcacatttggtatgtcaattctttgcctagccgcatt
ggcacgcttttaggcattaaaatgaaagatttagagcgcgtgctctactacgaagcctac
attgtgaaagaccccgccagcgcgtgttacgacatcgagggtacaaaacccgtgttgaaa
tacgacattttaaacgaggagcaattccaaagcatccaacggcacaactccgatcccgac
ttcaacgcacaaatgggcggggaggtcattaaagagctcttggaggaattagaccttgtc
gccttgcttgaggcgttaaaagaagaggtgaaaaacaccaattcggatgctaagaaaaag
aaactggtaaaacgcctcaaagtcgtggaaagcttcatcaattcaggcaaccaccccgag
tggatgatgctaacagccttgcccgtgttgcccccagatttacgcccccttgtggcgtta
gatggcggtaagtttgccgtgagcgatgtgaatgagctttaccgccgcgtgatcaaccgc
aaccaacgcttgaaacggcttatggagctgggtgcgcccgaaattattgtgcgtaatgaa
aagcgcatgttacaagaagccgtggatgccttgtttgacaatgggcgcaacgccaatgcc
gtgaaaggcgcaaacaaacgccccttaaaatccctaagcgagatcatcaagggcaaacaa
gggcgtttccgccaaaacttgctgggtaaacgggtggatttctcggggcgtagtgtgatt
gtggtgggacccaatctcaacatggatcaatgcgggttgcctaaaaatatggcattggag
ctctttaagccccatttgctctctaagttagaggaaaagggttttgcgactacattcaaa
caagccaaacgcatgattgagcagaaaaccaacgaggtttgggagtgcttagaggaaatt
gtggagggctatccggtgctcttaaaccgcgcgcccacactgcataaacaatccatccaa
gccttccaccctaaactcatcgatggcaaggcgatccaactgcacccgctggtgtgctct
gccttcaacgccgactttgacggcgaccagatggctgtgcatgtgcccctaagccaagag
gcgatcaccgaatgcaaggttttaatgctaagttccatgaatatcttgctaccagctagc
ggtaaggctgtggctgtgcctagccaggacatggtgcttggaatttactacttatcctta
gaaaaaaacggggtgctgggcgagcataaacttttctctagcgtggcggaagttttaatg
gcagtggatgccaaagaattggatgtgcatgccaaggtgcgggtattacaagaacgccac
attttgcaaaccactgccgggcggctggtgattaaatctattctacctgactttgtgccc
actcacttgtggaataaggtccttaagaaaaaagacatcggggcgttggtggattttgtt
tataaagagagcgggatcgggcagacggctaaattcttagacaatcttaaaaacctaggc
tttaaatacgccaccaaagcggggatctctatttccatggaggacatcatcactcccgct
aataaagtgcatatggtggaggtggctaaagggcgggtcaaagacatccaagcgcaattt
gagggcgggcacttgagcgagcaagaacgctacaataaaatcattgacatttggaccgaa
gtcaatgacgccatgagccaagagatgatggcagccattgccagcgataagcagggcttt
aactccatttatatgatggctgatagcggggctaggggttcagccgcgcaaatccgccaa
ctctctgccatgcgtgggctgatgactaaacccgatggctcgatcattgaaacgcccatc
atctctaactttaaagagggcttgaatgtgttggagtattttaactccacacacggggcg
cgtaaagggctcgcagacaccgctttaaaaaccgccaccgccggttacctcacccgcaaa
ctcatcgatgttgcccaaaatgttaaggtcgtgcaagaggattgcggcacacacgagggc
attgagatcaccgacatcacggtgggcagcgaactcatcgaacccttagaagagcgcatt
tttgggcgggttttagtggaggacatcatcgatccgctcacaaacgaggttttgttaaat
gccgacacgatggtggatgaagagaaagcaaaacgggttgtcgaagccgggattaaatcc
gtaaccatccgcacgccagtaacttgtaaggcgcaaaagggcgtgtgcgccaagtgctat
ggcttgaatctaggcgagggcaaaatggttaagccgggcgaggctgtgggcgtggtggcg
gcgcaatccattggcgagccgggcacgcaattaactttgcgcaccttccatgtgggcggg
acggcttcaaggagccaagaggagcgcgagatcttggcaagcaatgagggctttgtgcgc
tttttcaatgtcaaaacctaccaaaacaaagagggcaagaacatcatcgtgaatcgccgt
aacgccgcgatcttggtggttgaacccaagatcaaagccccctttgccggcacgcttaaa
atcgacagcgcgcacgaagaggtggtcttaagtgtgagcgatggcgacaaagaagccaag
tttgtgttgcgtaaaagcgatgtggctaaacctaatgaacttgccggcgtgagcggtaaa
attgagggcaaaatttacctgccctatagcaatgggcatgttgtacatgaggggggcagc
atcgctgacatcatcaaagacggctggaatgtgccaaatcgcatcccctacgccagcgag
atcgccgtgcaagacaacgaccccatcacccaaaacacccttgccaaagaaaaaggcgtg
gtgaagttttataacctcgtgggcgatcacttagagcgcgcgcggggcattaaagccggc
gatatcgtggaggaaaagggcttatttgccgtggttgccgatgaaaacgaccaggaggcg
atccgccactacatcgcgcgcaactctttggtgcaagtggacgacaacagccccgtaaaa
gccgacacgcttttagtcaaacccagcactgaaagtaaaaatgtcatcgccagctgggac
ccctacaacaccccccatcatcgccgacattgccggcgtggtgcgctttgtggacattgt
ggcgggggtgagcgtgactga
DBGET
integrated database retrieval system
