Helicobacter gastrofelis: NHP190012_15260
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Entry
NHP190012_15260 CDS
T10844
Symbol
uvrB
Name
(GenBank) Excinuclease ABC subunit B UvrB
KO
K03702
excinuclease ABC subunit B
Organism
hga Helicobacter gastrofelis
Pathway
hga03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NHP190012_15260 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hga03400
]
NHP190012_15260 (uvrB)
DNA repair and recombination proteins [BR:
hga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NHP190012_15260 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NHP190012_15260 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
AAA_22
Kinesin
SWI2_SNF2
UvrD-helicase
DUF6392
UB2H
DUF87
Motif
Other DBs
NCBI-ProteinID:
BCZ19884
UniProt:
A0ABM7SJN7
LinkDB
All DBs
Position
1441794..1443752
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AA seq
652 aa
AA seq
DB search
MDFILQAPYKPSLEQEKAVNQLVQGVKQGAAYQTLLGVTGSGKTFSMAQLIAKLQMPTLV
MSHNKTLCAQLYSEFKGFFPKNHVEYFISYFDYYQPESYIPRRDLFIEKDSAINEDLERL
RLSAITSLLGYDDVIVVASVSANYGFGDPMEYLSMLTKLEVGQSLPYTEFLRKLIDMGYE
RQEILERGRFRVVGESVDIFPAYNDSNFIRVEFFGDEIERIYSFDALENKPLKALESYVL
YAANAFIVSQSRLKSALNSIETELADRLKFFKEHNKPLEYERLKTRTEFDLEMMAATGIC
KGIENYSRHFTDKKAGDTPYTLLDYFAQKKRPFLVIVDESHVSLPQFKGMYAGDHSRKQV
LVDYGFRLPSALDNRPLKYEEFIKKPPHFLFVSATPNPLELELSRGHIAEQIVRPTGLLD
PEYEIRPTQNQVQDLYSTIKEVVARKERVLVTTLTKKMAEELCKHYLEGGLKVQYLHSDI
DAIERNHLIRSFRLGEFDILIGINLLREGLDLPEVSLVAILDADKEGFLRSTTALIQTMG
RVARHINGRVIFYADKITASMQEAMATTDKRRAIQIAFNKAHNITPKSTQRPLEDELKDY
TPPKPKSTDKMPKREKEQLIKKLRAQMQERARVLDFEAAAKLRDEIAKLRGL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggactttatcctacaagccccctacaaaccaagtttagagcaagaaaaagcggttaat
cagctagtccaaggcgttaagcaaggggcggcttaccaaaccttgctaggtgttacaggt
agcggcaaaacctttagcatggctcaactcattgctaaattgcaaatgccgactttagtc
atgtcgcacaacaaaaccctttgcgcccagctttacagcgagtttaagggctttttccct
aaaaaccatgtggagtattttatctcttactttgactactaccagcccgagtcctatatc
ccaagaagggatttattcattgaaaaagatagtgccattaacgaagatttggagcggctg
cggcttagtgccatcacttcgctgctaggctatgacgatgtcattgtcgtggcaagcgtg
tcggcgaactatggctttggcgatcctatggagtatttaagcatgctcacaaaattagaa
gtggggcaaagcttgccctacacagagtttttaagaaaactcatagacatgggctatgag
cgacaagaaatcctagagcggggcaggtttagagtggtgggcgagagtgtggatattttc
cctgcctacaatgacagcaactttatccgtgtggagttttttggcgatgagatcgaacgc
atttatagctttgacgcactagagaataaaccccttaaagccctagagagttatgtgctt
tatgccgccaatgccttcattgtgagccaaagccgcctaaagagtgccctaaatagcatt
gagaccgagttagccgacaggcttaaattctttaaggagcacaacaagcccctagagtat
gaacgccttaaaacccgcacagagtttgatttagaaatgatggcggccacgggcatttgt
aaggggattgaaaactactcacggcatttcaccgacaaaaaggcgggcgacacgccctac
accctgctagactacttcgcccaaaaaaaacgcccctttttagtcatcgtggacgaatcg
catgtgagtttgcctcaatttaagggcatgtatgcgggcgatcacagccgtaagcaagtg
ttagtggattatggctttaggctgccctccgccttagacaaccgccccctaaagtatgaa
gagtttatcaaaaagcccccccattttctctttgtctccgccaccccaaaccccctagaa
ttagagctttcaagggggcacattgccgagcaaatcgtgcgtcccacagggctactagac
cccgagtatgagatccgccccacccaaaaccaagtgcaggatttatacagcacgattaaa
gaagtcgtggcgcgcaaagagcgggtgctggtaacgactttgacgaaaaaaatggctgaa
gagctgtgtaagcactatttagaggggggcttaaaggtgcaatacttacacagcgacatc
gatgcgattgagcgcaaccacttaatccgctcattccgcttaggcgagtttgacattttg
atcggcattaacctgcttagagaggggctagacttgcccgaagtgtccttagtcgccatt
ttagacgcagacaaagaggggtttttaagaagcaccaccgctttaatccaaacaatgggg
agggtcgcacgacacattaatgggcgggtgattttttacgccgataaaatcacggcgagc
atgcaagaggcgatggcgaccacggataaaaggcgcgcgatccaaatcgctttcaataaa
gcccacaacatcacccccaaaagcactcaacgccccctagaggatgagctcaaagactac
acccctcctaagcccaaatccacagacaaaatgcccaagagagaaaaagagcagttgatt
aaaaagctacgcgcccaaatgcaagagcgggcacgggtgttagactttgaggcggcggcg
aaactaagagatgagatcgccaaacttagggggctttag
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