Haloferax gibbonsii: ABY42_01760
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Entry
ABY42_01760 CDS
T04025
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hgi
Haloferax gibbonsii
Pathway
hgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABY42_01760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hgi03019
]
ABY42_01760
03016 Transfer RNA biogenesis [BR:
hgi03016
]
ABY42_01760
Enzymes [BR:
hgi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ABY42_01760
Messenger RNA biogenesis [BR:
hgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABY42_01760
Transfer RNA biogenesis [BR:
hgi03016
]
Prokaryotic type
tRNA degradation factors
ABY42_01760
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
DUF982
Motif
Other DBs
NCBI-ProteinID:
AKU06528
UniProt:
A0A0K1IQE4
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All DBs
Position
complement(325539..326858)
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AA seq
439 aa
AA seq
DB search
MSDDAQAYAGTAEGQGPVEIDAELARHLQNKREDLFEEFEIRDKFPPEVLSEARARTDGV
HEEIEDELEHRKDLRDLTTWTTDPVDAQDFDDALSIRENEETYTLWVHIADVTHYVHPGS
EMWAEAVKRGNTVYLPAYTIHMLPPALAETVCSLVPEEDRLAHTVEMEIKKDTLSFESID
IYKSVIHSNERLTYTQCENRLEDPDLPLHEENALVFDLADQLHEQRKEDGSLVLNPSRDR
AHTIIEECMLKANKAVTHELMWNRGVEAMYRVHPQPTPDQWDKALREITELDGVSIQSTS
WDEPRKAVNDALESANSRTLNKIQRAVLKVMPRAKYMNDPFGGHYALNFDIYGHFTSPIR
RLSDLINHWIVHENDVPEDLVELCDRASDRQKDAETAERLYKQFLQEVGLDPYAVNNRGI
VTVDDDGEVIDENGLPPRE
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgacgcgcaggcgtacgccgggaccgccgaagggcaaggaccggtggagata
gacgccgaactcgcgcgacacctccagaacaagcgcgaggacctgttcgaggagttcgag
attcgagacaagttcccgccggaagtcctctcggaggcgcgtgcgcgcaccgacggcgtc
cacgaggagatcgaagacgagttggaacaccgcaaggacctccgagacctcacgacgtgg
acgacagaccccgtcgacgcccaggacttcgacgacgccctgagcatccgcgagaacgag
gagacgtacacgctgtgggtccacatcgccgacgtgacccactacgtccaccccggttcg
gagatgtgggccgaggccgtcaagcgcggcaacaccgtctacctccccgcctacaccatc
cacatgctcccgccggcgctggccgagacggtctgttctctcgtccccgaggaggaccga
ctcgcgcacaccgtcgagatggagatcaagaaggacacgctctcgttcgagtctatcgac
atctacaagtccgtcatccactccaacgaacggctcacctacacgcagtgtgaaaaccgg
ctggaagaccccgacctccccctccacgaggagaacgcgctggtcttcgacctcgcggac
cagctccacgagcagcgcaaggaagacggctcgctcgtcctcaacccgagccgcgaccgc
gcccacaccatcatcgaggagtgcatgctgaaggcgaacaaggccgtcacgcacgaactc
atgtggaaccgcggcgtcgaggcgatgtaccgcgtccacccgcaacccactcccgaccag
tgggacaaggcgctccgcgaaatcaccgaactcgacggcgtgagcatccagtccacgtcg
tgggacgagccccggaaggccgtcaacgacgccttggagagcgcgaactcccgcacgctc
aacaagattcagcgcgccgtgctgaaggtcatgccccgcgcgaagtacatgaacgacccc
ttcggcggccactacgcgctcaacttcgacatctacggccacttcacctctcccatccgg
cggctgtcggacctcatcaaccactggatcgtccacgaaaacgacgtgcccgaagacctc
gtcgagctctgcgaccgcgcctccgaccgtcagaaggacgccgagacggccgagcggctc
tacaagcagttcctccaagaagtcggcttggacccctacgcggtcaacaaccgcggcatc
gtcaccgtcgacgacgacggcgaggtgatcgacgaaaacggcctcccgccgcgcgaataa
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