Haloferax gibbonsii: ABY42_05090
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Entry
ABY42_05090 CDS
T04025
Name
(GenBank) transcription initiation factor IIB 2
KO
K03124
transcription initiation factor TFIIB
Organism
hgi
Haloferax gibbonsii
Pathway
hgi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hgi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
ABY42_05090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hgi03021
]
ABY42_05090
Transcription machinery [BR:
hgi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
ABY42_05090
Prokaryotic type
Archaeal type
TFB
ABY42_05090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_C
Zn_ribbon_PaaD
Cyclin_N
Sigma70_r4
A2L_zn_ribbon
Trm112p
HTH_Tnp_ISL3
Zn_ribbon_tTFIIB
Ribosomal_S27e
UMPH-1
DUF8106
Motif
Other DBs
NCBI-ProteinID:
AKU07145
UniProt:
A0A0K1IS42
LinkDB
All DBs
Position
complement(965202..966200)
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AA seq
332 aa
AA seq
DB search
MTESVRRFTTGNARVRNENTKDTEQTDAEREQTLSCPECDSESLVADSEHGETVCEDCGL
VVEENEIDHGPEWRAFNSSEKDQKSRVGAPTTNMMHDKGLSTNIGWQNKDAYGRSLSSRQ
REKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPDNVRETASVIYRRALDDDL
LPGRSIEGVATSALYAAARMADTPRSLDEITSVSRVEKDEIARTYRYVVRELKLEIKPAD
PEQYVPRFASELGLSDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVT
QNEVSEVANISEVTIRNRYHELLEAEEQVQLP
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaagtgtccgacgtttcacgaccggcaacgcgcgcgtgcgcaatgagaatacg
aaagataccgagcagaccgacgccgagcgggagcagacgctctcgtgtcccgagtgtgac
tcggagagtctcgtcgccgactccgaacacggcgagacggtctgtgaggactgcggcctc
gtcgtggaggaaaacgagatagaccacggccccgagtggcgcgcgttcaactcctcggag
aaagaccagaagtcccgcgtcggcgcgcccacgacgaacatgatgcacgacaaggggctg
tcgaccaacatcggttggcagaacaaagacgcctacgggcgctcgctgtcgtcccgccag
cgcgagaagatgcagcggcttcgcacgtggaacgagcggttccgcacccgcgactccaag
gagcgcaacctgaagcaggcgctcggcgaaatcgaccgcatggcctccgcgctcggcctc
ccggataacgtccgcgagaccgcctcggtcatctatcgccgcgcgctcgacgacgacctg
ctccccggccgctccatcgagggcgtcgccacgtcggcgctgtacgccgccgcccgcatg
gccgacaccccgcggtcgctcgacgagattacgagcgtctcgcgcgtcgagaaggacgaa
atcgcccgcacctaccgctacgtcgtccgcgagctaaaactcgaaatcaagcccgccgac
cccgagcagtacgtcccgcggttcgccagcgaactcggcctctccgacgagtccgagcgg
cgcgcccgacagctcttgaagaacgccaaagaacagggtgtccactcgggcaagtccccc
gtcggcctcgccgccgccgccgtctacgcggcctcgcttctcaccaacgagaaggtgacg
cagaacgaggtctccgaggtcgccaacatctccgaggtcaccatccgcaaccgctaccac
gaactcctcgaagccgaagagcaggtccaactgccctaa
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