Haloferax gibbonsii: ABY42_06625
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Entry
ABY42_06625 CDS
T04025
Name
(GenBank) DNA repair helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hgi
Haloferax gibbonsii
Pathway
hgi03022
Basal transcription factors
hgi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hgi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
ABY42_06625
09124 Replication and repair
03420 Nucleotide excision repair
ABY42_06625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hgi03021
]
ABY42_06625
03036 Chromosome and associated proteins [BR:
hgi03036
]
ABY42_06625
03400 DNA repair and recombination proteins [BR:
hgi03400
]
ABY42_06625
Enzymes [BR:
hgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
ABY42_06625
Transcription machinery [BR:
hgi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
ABY42_06625
Chromosome and associated proteins [BR:
hgi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
ABY42_06625
DNA repair and recombination proteins [BR:
hgi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
ABY42_06625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
AAA_22
SLFN-g3_helicase
PhoH
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AKU07429
UniProt:
A0A0K1ISL9
LinkDB
All DBs
Position
1246848..1249202
Genome browser
AA seq
784 aa
AA seq
DB search
MAVATGPQSVTWQEVFGHPEAYPEQADGIETAIQTARDDGFAVVEGACGTGKTMLALTAG
IDLVRDPDSDYERVFVLTSVKQQLRQFEADLRTINENLPSDWKPVSGLTLVGKSDVCPYS
REGCGGIDDATVYDRCEGLRDRTRGLVGDGGRTSAEALAKDAREQQTGLLDTGSTTAGPN
YLETAGDPTPYPKSMPDYEDVEYCPFYANFLADLPEDGDPIEAVPFEFDDKGLIATEDLV
SLAAGAGSCPHSVMGALLPNVEVVVGNYYHAFDPTTVGTFTGALVDDSTFVICDEAHMLE
PRVRDLVSVGVGDRTLRDAESEFTRVIQPVKFDDAGKSTVDAELVRGELQEADVTLRELE
ETRDFIRDLREELDRRVTAHLDREYVGWRADLTELEDEELPLRDPEEPGVDELTEWAEES
GHDEGTWVRAEATGSAVARILDSVEEDDKRRAAPAAGRALATWAYADHEKHFREIELERT
WDEMEPPESWRRAYNARVSVHNCVPGEAIAERLGDFGGGVLMSATLEPIDVFRRVTGLDA
LADDGRPVAERTFGLGFPESNRASFAVDVPKFTHSNRGPPGEENETRLAYTDAAVEVCER
SPGNVLVGMPNYAEAEWMAGALEARVDKPVLLDESSDDGATERLKRDFFGGDGKVLVTSL
RGTLTEGVDYSGDKLSAAVVCGVPLINTSSPRTRAVKTAYDREFGNGFETALTVPAVRKA
RQAIGRVIRGTDEVGVRVFVDARYARDSWNGVRDYLPEQEREEFRPVSPDMLGFGLDRFW
SSVE
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggccgtcgcaactggaccacagagcgtgacctggcaggaggtgttcggccacccggag
gcgtacccggagcaggccgacggaatcgagaccgcgatacagaccgcccgagacgacggg
ttcgccgtcgtggagggcgcgtgcgggaccggcaagacgatgctcgcgctcaccgccggc
atcgacctcgtccgcgacccggactccgactacgagcgcgtcttcgtcctcacgagcgtc
aaacaacagctccggcagttcgaagccgacctccgaaccatcaacgagaacctcccgagc
gactggaaacccgtctcgggactcacgctcgtcggcaagtccgacgtgtgtccctacagc
cgcgagggctgcggcggcatcgacgacgcgaccgtctacgaccgctgtgagggcctccgc
gaccggacccgcgggctcgtcggcgacggcggccggaccagcgccgaggcgctcgcgaaa
gacgcccgcgagcaacagaccggcctcctcgacaccggttcgaccaccgcgggcccgaac
tacctcgaaaccgccggcgacccgacgccgtaccccaagtcgatgccggactacgaggac
gtggagtactgcccgttctacgcgaacttcctcgctgacctccccgaagacggcgaccca
atcgaggccgttcccttcgagttcgacgataagggcctcatcgcgaccgaagacctcgtc
tcgctggccgcgggcgcggggtcgtgtccccactcggtgatgggcgcgctgttgcccaac
gtcgaggtcgtcgtcggcaactactaccacgcgttcgacccgacgaccgtcggcaccttc
accggcgcgctcgtcgacgactcgacgttcgtcatctgcgacgaggcgcacatgctcgaa
ccccgcgtccgcgacctcgtctcggtcggcgtcggcgaccggacgctccgcgacgccgaa
agcgagttcacccgcgtcatccagcccgtgaagttcgacgacgccggcaagtcgaccgtc
gacgccgaactcgtccgcggagagctccaagaggccgacgtgacgctccgcgaactggag
gagacccgggacttcatccgcgacctccgggaggaactcgaccggcgcgtgaccgcgcac
ctcgaccgcgagtacgtcggctggcgcgccgacctcaccgaactcgaagacgaggaactc
cccctgcgcgaccccgaggagcccggcgtcgacgaactcaccgagtgggccgaggagagc
ggccacgacgaggggacgtgggtccgcgccgaggcgaccggctcggcggtcgcccgcatc
ctcgactcggtggaggaagacgacaagcgccgggccgcgccggcggcggggcgggcgctg
gcgacgtgggcctacgcggaccacgaaaagcacttccgcgaaatcgagctcgagcggacg
tgggacgagatggagccgccggagtcgtggcgtcgcgcgtacaacgcccgggtgtcggtc
cacaactgcgtccccggcgaggccatcgccgagcgcctcggcgacttcggcggcggcgtc
ctgatgagcgcgacgctcgaacccatcgacgtgttccgccgcgtgaccggcctcgacgcc
ctcgccgacgacggccgcccggtcgccgagcggacgttcggcctcggcttccccgagtcg
aaccgcgcgagcttcgccgtcgacgtgccgaagttcacccacagcaaccgcgggccgccc
ggcgaggaaaacgagacgcggctcgcgtacaccgacgccgccgtcgaggtgtgcgagcgc
tcgccgggcaacgtcctcgtcgggatgccgaactacgccgaggccgagtggatggcgggc
gcgctcgaagcccgcgtcgacaagcccgtcctcctcgacgagtcgtcggacgacggggcc
acggagcggctcaagcgcgacttcttcggcggcgacgggaaggtgctcgtgacgagcctc
cgcggcacgctcaccgagggcgtcgactacagcggcgacaagctctcggccgccgtcgtc
tgcggcgtcccgctcatcaacacgtcgtcgccgcggacccgcgcggtgaagacggcctac
gaccgcgagttcggaaacggcttcgagacggcgctcacggtgcccgcggtcagaaaggcg
cggcaggccatcgggcgcgtcatccgcgggaccgacgaggtcggcgtccgcgtcttcgtt
gacgcccggtacgcccgcgactcgtggaacggcgtccgcgactacctgccggaacaggag
cgcgaggagttcaggccggtcagtcccgacatgctcggcttcggcctcgaccggttctgg
tcgtcggtcgagtag
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