Haloferax gibbonsii: ABY42_07200
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Entry
ABY42_07200 CDS
T04025
Name
(GenBank) transcription initiation factor IIB 3
KO
K03124
transcription initiation factor TFIIB
Organism
hgi
Haloferax gibbonsii
Pathway
hgi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hgi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
ABY42_07200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hgi03021
]
ABY42_07200
Transcription machinery [BR:
hgi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
ABY42_07200
Prokaryotic type
Archaeal type
TFB
ABY42_07200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Zn_ribbon_LysW
Ribosomal_S27e
Zn_ribbon_PaaD
A2L_zn_ribbon
Trm112p
Sigma70_r4
Zn_Ribbon_YjdM
Zn_ribbon_RRN7
Zn_ribbon_tTFIIB
Lar_restr_allev
Zn_ribbon_8
Cyclin_C
Zn_ribbon_Elf1
Zn_ribbon_IS1595
Cyclin_N
DUF5817
Zn_ribbon_Brz
Motif
Other DBs
NCBI-ProteinID:
AKU07536
UniProt:
A0A0K1ISU5
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All DBs
Position
1359171..1360124
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AA seq
317 aa
AA seq
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MERPSRQRQREEEATAQEDEQVNCPECGSDQIVTDADQGELVCDDCGLVLDERQIDRGPE
WRAFNHSERQSKSRVGAPITETMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQE
RIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATS
ALYAACRQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLELKPVDPKQFVPRFASAL
DLSEEVQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTE
VTIRNRYQEQIEAMGFR
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggaacgtccgagccggcagcgtcaacgagaggaggaggcaacggcacaagaggacgag
caagtcaactgtccggagtgtggctctgaccagatcgtcacggacgcagaccagggggag
ctggtgtgtgacgactgcggactcgtcctcgacgagcgacagatcgaccgcggcccggag
tggcgggcgttcaaccactccgagcggcagtcgaagtcgcgcgtcggtgcgcctatcacg
gagacgatgcacgaccgggggctgacgacgaccatcgactggaaggacaaagacgcctac
ggtcgctcgctttcgtccgagaagcggtcgcagatgcaccgcctgcgcaagtggcaagag
cgcatccgcacgaaagacgccggcgagcgcaacctccagttcgcgctcagcgaaatcgac
cgcatggcctcggcgctcggcgtcccgcggtcggtccgcgaggtcgcctcggtcatctat
cgccgcgcgctcaacgaggacctgattcgggggcgctccatcgagggcgtcgccacctcg
gcgctctacgccgcctgccgtcaggaaggcatcccgcgctcgctcgacgaagtcgcggaa
gtgtcgcgcgtcccgcagaaggaaatcggtcgcacgtaccgctacatctcccaggaactc
ggcctcgaactcaagcccgtcgaccccaagcagttcgtcccgcggttcgcctccgcgctc
gacctctccgaggaggtccaggccaaggcgaccgaaatcatcgacgtgtccgccgagcag
gggcttctctccgggaagtcgccgaccggcttcgccgccgccgcaatctacgccgcctcg
cttctctgcaacgagaagaagacccagcgcgaggtcgcggacgtggcgcaggtgacggaa
gtcaccatccggaaccgctaccaagaacagatcgaagcgatgggcttccgctga
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