Haloferax gibbonsii: ABY42_13645
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Entry
ABY42_13645 CDS
T04025
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hgi
Haloferax gibbonsii
Pathway
hgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABY42_13645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hgi03019
]
ABY42_13645
Messenger RNA biogenesis [BR:
hgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABY42_13645
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
AKU08727
UniProt:
A0A0K1IW27
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All DBs
Position
2673897..2675249
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AA seq
450 aa
AA seq
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MEIEIATIGGYEEVGRQMTAVRAGDDVVVFDMGLNLSQVLIHDNVETEKMHSLDLIDMGA
IPDDRVMSDLEGDVQAIVPTHGHLDHIGAISKLAHRYDAPVVATPFTIELVKQQIEGENK
FNVNNDLVKMEAGETMSIGDSGNVELEFVHVTHSIIDAINPVVHTPEGAVVYGLDKRMDH
SPVLEDPIDMKRFREIGREGNGVLAYIEDCTNAGRKGRTPSESVARRHLKDVMTSVEDYD
GGIVATTFSSHISRVSSLVEFAKDIGRQPVLLGRSMEKYSGTAERLGFVDLPDDLGMYGH
RKSVDRTFKRIMKEGKENYLPIVTGHQGEPRAMLTRMGRGETPYEIDDGDKVIFSARVIP
EPTNEGQRYQSERLLRMQGARIYDEIHVSGHLREEGHYEMLQALQPQHVIPAHQNLKGFA
PYVDLAESQGYALGRDVHVTRNGNMIQLVE
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgaaatcgcaaccataggcggatacgaagaagtcggccgtcagatgacggcc
gtccgtgccggagacgacgtcgtcgtcttcgacatgggtctcaacctgtcgcaggtcctc
atccacgacaacgtcgagaccgaaaagatgcacagcctcgacctcatcgacatgggcgct
atcccggacgaccgggtcatgagcgacctcgaaggagacgtgcaggccatcgtccccacg
cacggtcacctcgaccacatcggtgccatctccaagctcgcccaccgctacgacgccccc
gtcgtcgccacgcccttcaccatcgaactggtgaaacagcagatcgaaggcgagaacaag
ttcaacgtcaacaacgacctcgtcaagatggaagccggcgagacgatgtccatcggcgat
tccggcaacgtggaactcgaattcgtccacgtcacccactccatcatcgacgccatcaac
ccggtcgtccacacgcccgagggcgccgtcgtctacggtctcgacaagcgcatggaccac
tcgccggtcctcgaagaccccatcgacatgaagcgcttccgcgaaatcggtcgcgagggc
aacggcgtgctcgcgtacatcgaagactgtacgaacgccggccggaagggccgcacgccc
tccgagtccgtcgcgcgccgccacctcaaagacgtgatgacctccgtcgaggactacgac
ggcggcatcgtggcgacgacgttctcgtcgcacatctcccgggtctcctcgctcgtcgag
ttcgccaaggacatcggccgccagccggtcctcctcggtcgctcgatggagaagtactcc
ggcaccgccgagcgcctcggcttcgtcgacctccccgacgacctcgggatgtacggccac
cgcaagtccgtcgaccgcaccttcaagcgaatcatgaaggagggcaaggagaactacctg
cccatcgtcacgggccaccagggcgagccgcgcgcgatgctcacccgcatgggccgcggc
gagacgccgtacgagatcgacgacggcgacaaggtcatcttctcggcgcgggtcatcccg
gagccgacgaacgagggccagcgctaccagtccgagcgcctcctgcgcatgcagggcgcg
cgcatctacgacgagattcacgtctcgggccacctccgcgaagaggggcactacgagatg
ctgcaggcgctccagccccagcacgtcatcccggctcaccagaacctgaaaggcttcgct
ccgtacgtggacctcgccgagagtcagggctacgccctcggtcgcgacgtccacgtcacg
cggaacggaaacatgattcagctggtggagtga
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