Haloferax gibbonsii: ABY42_14715
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Entry
ABY42_14715 CDS
T04025
Name
(GenBank) tRNA splicing endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
hgi
Haloferax gibbonsii
Brite
KEGG Orthology (KO) [BR:
hgi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hgi03016
]
ABY42_14715
Enzymes [BR:
hgi01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
ABY42_14715
Transfer RNA biogenesis [BR:
hgi03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
ABY42_14715
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Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-ProteinID:
AKU08923
UniProt:
A0A0K1IXA4
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All DBs
Position
complement(2879927..2880946)
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AA seq
339 aa
AA seq
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MQGRLEDGVVHLPGDARQRFHDSRGYGRPTGGDDLEVAPVEAAHLLSRDDIDGVDGMGLR
ELLARTGTTLDFVVYKDLRDRGFYLSPAREGWPGVGDAAGADFLVYPRGKGPWDGEVEHR
VRVVGERESIPVSSLGDVVLAIVDEDGDLTYFDTEGYSPEGTAAEDLPADLDAELLSDRA
LVWDGVDRLYQRGFFGQRLYGRNADSGPLQLSLLEAAYLARADALATDEADVVSRGRDVE
GDRFDRRLAVYAALRGAKTVPKSGFKFGSDFRVYTEFESVSDLSHSEFLVRVVAPDHTFV
PRDLSLDVRLAGGVRKRMVFALTDDNGEIDWLSVSRLTP
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggacgcctcgaagacggcgtcgtccacctcccgggcgacgctcgacagcggttc
cacgactcgcgcggctacgggagacccaccggcggcgacgacctcgaggtcgcgcccgtc
gaggccgcccacctgctctcgcgggacgacatcgacggcgtggacgggatgggcctgcgc
gaactcctcgcgcgaacggggaccaccctcgacttcgtcgtctacaaggacctccgcgac
cgcgggttctacctctcgcccgcccgggagggctggcccggcgtcggcgacgccgcgggc
gcggacttcctcgtctacccccgcgggaaaggtccgtgggacggcgaggtcgaacaccgg
gtccgcgtcgtcggcgagcgcgagagcatccccgtctcgtcgctcggggacgtggtgctc
gccatcgtcgacgaggacggcgacctgacctacttcgacaccgagggctactcccccgag
ggcacggccgcggaggacctcccggccgacctcgacgcggagctcctctcggaccgcgcg
ctcgtctgggacggcgtcgaccgcctctaccagcgcggcttcttcggtcagcgactctac
gggagaaacgccgacagcggcccgctccaactgtcgctcctcgaagccgcctacctcgcc
cgcgccgacgcgctcgccaccgacgaggccgacgtggtctcccgcggccgcgacgtcgag
ggcgaccgattcgaccgccggctcgcggtctacgccgcgctccggggggccaagacggtc
cccaagagcggcttcaagttcggctcggacttccgcgtctacacggagttcgagtcggtg
tctgacctctcgcactccgagttcctcgtgcgcgtggtcgcgcccgaccacacgttcgtc
ccgcgggacctctcgctcgacgttcgcctcgccggcggtgtccgcaagcgaatggttttt
gcgctgaccgacgacaacggagagatagactggctttcggtcagtcggctcacgccatga
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