Heterocephalus glaber (naked mole-rat): 101702087
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Entry
101702087 CDS
T02812
Symbol
Ddx60
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
hgl
Heterocephalus glaber (naked mole-rat)
Brite
KEGG Orthology (KO) [BR:
hgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hgl03019
]
101702087 (Ddx60)
Enzymes [BR:
hgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101702087 (Ddx60)
Messenger RNA biogenesis [BR:
hgl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
101702087 (Ddx60)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
101702087
NCBI-ProteinID:
XP_004853148
UniProt:
A0AAX6PJ06
LinkDB
All DBs
Position
Un
AA seq
1467 aa
AA seq
DB search
MDKSTLFLEKISRFISDKLPTAEYSSLFNDFVESEFFLIDGDSLLSTCVCEKLLQPGQNL
HFFYLVEHYLMDLINKGGQFTIVFFQDAEYTYFSSPELLSLRTALILHLQKNTSINVCTQ
FTGCLSKDSKMFLDENYPYFLIVADEGLNPLQTQLFNFLIIQCWSERVNVVLFSGQTSDI
LRLYAYFLPSLYRNQNFFKENENKIQNSYKRLLRKLRKYRVLPLAPLLKNLALKHMMEEA
YETVCLLQQVWLNGSDIRRVLCVTSCSLALGMYHHFLESRVKTSSEETTNKKKVNSDYLT
LQDVEDLCKLHCLSVVFLLHIPLSQRARSRFITSDWVEDTQMFFKMKKWCEYFILCNTNV
LEFWNLNLIHLSDLSDEPLLKNITLYYENENVKGLHLNLGSAIKKDYEHLWETVSKLVRK
FDVGKPFPVRTTKLQFLEKTPSSIKDNSKEKMPTLGFIPMSSQMVDKFVGDILKDLPFLR
SDDPIVTSLVKQKEFDELVHWHSHRPLSDDYDRTKSNFAEKSNDPRFHRNLQKYRLFQRF
YGNSLDPIPSKLIVTQSIKQQKNFNEVKRKKAHETKAEIIARENKERIFAKEEQKDEQKW
KALSLSIKEEMTKNLNSGVKDLEDFLKSCKSNSVKVRVEMVGLTACLKAWREHCRGEGKT
IKDFNIAVQMMKRIHSLMDKYSDLLQDADRQFISRCLNYLGFDELARSLSDQDVVDDIKK
KRKNKYSIGIGPARFQLQYMGHHLIREERKDPDPRVQDFFPDTWQRELLDVVDNYESAVI
VAPTSSGKTYASYYCMEKVLKESDEGVVVYVAPTKALVNQVAATVQNRYTKNLPNGAALC
GVFTREYRHDALNSQVLVTVPACFEILLLAPHRQQWVKRIRYVIFDEVHCLGGEIGAEVW
EHLLVMIRCPFLALSATISNPEHLTGWLQSVKHYWKQEDRIIEQRMTSERSAGCRASFSK
DCLQIKQSYKVRLVLYGERYNDLEKYICSVKHNDICFDHFHPCAALTIDHIERYGFPADL
ALSPRESIQLYDTMFQAWKSWPRAQKLCPENFIHFKNKIIIKKVDARKYEESLKEELRNW
IKNGNIEQAKLVQRILKPDSVVSSGNMLEKFPLLVEKLRKVDKLPALFFIFSIKDVEECA
KNVHSFIEEKQEKKRPPKADKEAHDMANKLRKVKKSIEKQKTLDKKSKKKPITLDQTLIH
EAEHNCLLKSLEKNLEIPQDCTYADRKVMDAELLKMVFDRVKFERKGAELKALAESGIGY
HHSAMSAKEKQLVEILFRKGFIRVVTATGTLALGINMPCRSVVFVQNSVYLDALNYRQMS
GRAGRRGQDLLGDVYFFDIPLPKVGKLIKSKVPELRGQFPLKITLILRLMLLASKADDLE
DGQAKALSVLKHSLLSFKQPRAMEILKLYFLFSLQFLVKQGYLDREGNPTGFAGLVSHLH
YHEPSNLVFVSFLVRGLFHNLCQPTNK
NT seq
4402 nt
NT seq
+upstream
nt +downstream
nt
atggataaaagcacactgtttttagagaaaatttcacggtttatttcagacaaattgcca
acagctgaatattccagtttattcaatgattttgttgagtctgaattttttctgattgat
ggagattccttacttagcacatgtgtatgtgagaagttattacagccaggacagaatctc
catttcttctatctggttgaacactatctcatggatcttattaataaaggaggacaattt
accatagttttcttccaggatgctgagtacacatatttcagctctcctgaacttctttct
ttgagaactgctttaattcttcatcttcagaaaaataccagcattaatgtttgtactcaa
tttactggatgcttatcaaaggattcgaaaatgttcttggatgagaattacccatatttc
ctgatagttgcagacgaaggtctgaaccctctgcaaacccaacttttcaactttttaatc
attcagtgttggtcagagagggtcaatgttgtgcttttctctgggcaaacatctgatatt
cttcgactttatgcatactttctgccaagtctgtacaggaaccagaattttttcaaggag
aatgaaaataagattcaaaattcttataaaaggctccttagaaaattgagaaaatacaga
gttctacctttagcacctcttttaaaaaatttagcactgaaacatatgatggaagaggca
tatgagactgtatgtctgctccaacaagtctggctgaatggatctgacattcgacgggtc
ctttgtgtcacttcatgctcactggctttgggaatgtaccatcacttcttagaaagcaga
gtgaagacctcctctgaagaaacaactaacaaaaaaaaggtgaacagtgattacttaacc
ctgcaggatgtggaagatctgtgcaaactgcattgtctcagtgtggtttttctactacac
atacctctgtctcagcgagctcgctctagattcatcacttccgattgggttgaagacact
cagatgttctttaaaatgaaaaagtggtgtgaatatttcatcctgtgtaatacaaatgtt
ttggaattttggaatctgaatttaattcatctttctgacttaagtgatgagcctttgttg
aagaatatcactttgtattatgaaaatgaaaatgtgaaaggtttacatttgaacttggga
agtgccattaagaaagattatgaacatctctgggagactgtatcaaagttggtaaggaag
tttgatgtgggaaagccatttcctgtgagaacaaccaaacttcagtttcttgaaaagact
ccatcatcaatcaaagacaattccaaggaaaagatgcctactttgggttttattccaatg
tcatctcaaatggttgataaatttgttggagacattttgaaagatttaccttttctaagg
agtgatgatcctattgtaacgtcgctggttaaacagaaggagttcgatgagctcgtgcac
tggcattctcacagaccccttagtgacgattatgatcggactaaaagcaactttgctgaa
aagtctaatgaccctcgttttcatagaaacttacaaaaatatcgtctttttcaacggttt
tatgggaattcattagacccaatcccttcaaagctcattgtgacccaaagtataaagcag
cagaagaattttaatgaggtcaagaggaaaaaggcacatgagaccaaagcagaaataatt
gcaagagagaataaggagaggatatttgccaaggaagaacaaaaagatgagcaaaaatgg
aaagctctatcattgtctattaaagaagaaatgacaaagaatttaaactctggagtaaag
gacttggaagactttttgaagtcatgtaaaagtaactcagtgaaagttcgagttgaaatg
gttggtcttactgcctgcttgaaagcatggagagaacactgtcgaggtgaaggcaagacc
ataaaagatttcaatatagctgtccaaatgatgaaaaggatccactccttgatggataaa
tactcagatcttctgcaagatgcagatcggcagttcataagcagatgccttaattattta
ggatttgatgaattggcaaggtctttatcagaccaggatgtagtagatgacataaagaag
aagcgaaagaataaatattcaattggcattgggccagctcggtttcaactgcaatacatg
ggccatcatttgatacgagaggaaagaaaagatccagatccaagggtccaggattttttt
cctgatacttggcagcgagaactcctcgatgtggtggataactatgagtcagcagtgatt
gttgccccaacatcctcaggcaaaacctatgcttcctactactgcatggagaaagtgctg
aaggagagcgatgaaggggtggttgtgtatgttgcaccaaccaaggcccttgttaatcaa
gtggcagcaactgtacaaaatcgttacaccaaaaatctgccaaatggtgcagcactatgt
ggggtttttacaagggaatatcgtcacgatgcactcaactctcaggtacttgttacagtg
cctgcctgctttgaaattctgctgctagctccacatcgtcaacaatgggtgaaaaggatt
cgatatgttatatttgatgaggtccattgtcttggtggagaaattggagcagaagtctgg
gagcatctccttgtcatgattcgatgtccctttttggctctttcggctaccataagtaac
cctgagcatcttacagggtggctgcaatcagtcaaacattactggaaacaagaagacaga
ataatagagcaaaggatgacctccgagagaagtgcaggctgtcgtgccagtttttccaaa
gactgcttgcaaataaagcaatcatataaagttaggcttgtgctctatggagagaggtac
aatgatttagagaagtacatatgctctgtcaaacataatgacatttgttttgatcacttt
cacccatgtgctgcactaaccatagatcacattgaaaggtacggattccctgctgatctg
gcactttcacctcgagaaagcatccagctttatgacaccatgtttcaagcctggaaaagc
tggccacgggcccagaaactgtgtccagagaacttcattcattttaagaataaaataatc
attaaaaaggtggatgctagaaaatatgaagagagcttaaaggaagaattaagaaattgg
attaaaaatggcaatatagagcaggctaaactggtacagaggattcttaaacctgattcg
gttgttagttcaggaaatatgttggagaaatttccacttcttgttgaaaagctaaggaaa
gtggataagttacctgcactattttttatattcagtataaaagatgtagaagaatgtgcc
aagaatgtacacagcttcatagaggaaaagcaggagaagaaaaggcctcctaaagctgat
aaagaagctcatgacatggctaacaaacttcgaaaagttaagaaatccattgagaaacaa
aagacattagataaaaaaagcaagaaaaaaccaataacattggaccaaaccctcatacat
gaagctgaacataattgtctactgaaaagtttagagaagaacctggaaattcctcaggac
tgtacatatgctgatcgaaaagtgatggatgctgagttattgaagatggtgtttgatcgc
gtaaaattcgaaagaaaaggtgcagaactcaaagctttggcagagagtggtattggatat
catcacagcgccatgagtgccaaagaaaaacagctagttgaaattctctttcgaaaagga
ttcattagggtggtgacagctaccggaacacttgctttaggaatcaacatgccttgtaga
tctgtggtttttgtccaaaactcagtctatctggatgctttaaattacagacagatgtct
ggtcgtgctggaagacgggggcaagaccttctgggagatgtatatttctttgatattcca
ctgcctaaagtaggaaaactcataaaatccaaagttcctgagctcagaggacagttccct
ctcaagataaccctgattctgcgactcatgctgctggcttccaaggcggatgacctagag
gatggccaggcaaaggcgctgtctgtgctaaagcattcgctgctgtccttcaaacaaccc
agagccatggagatattaaaactttactttttattttctttgcagttcttggtgaagcag
ggctatctagatcgagaaggaaatcccacggggtttgctggactggtatcacatttgcat
tatcatgaaccttctaatcttgtttttgtcagttttcttgtaagaggccttttccataat
ctttgccaaccaactaataaag
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